Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1532 123 3e-23 seq1328 93.3 5e-14 >seq1532 Length=168184 Score = 123 bits (136), Expect = 3e-23 Identities = 175/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| ||| |||||| || |||||||| || || Sbjct 153028 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTCGAGAACGTCAAGCCC 153087 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || || || ||||| ||||||||||| Sbjct 153088 GGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATG 153147 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGAGCGGGACTTTGTATCA 127696 ||||| || |||||||| | || |||||||| || |||||| | || | Sbjct 153148 CCCTCGACGGCGGCGAACGCGACGAGCCGCTCGGCGAAGACGGAGCGCTCGTCTG---CG 153204 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | ||| || |||||| | |||||| |||| ||| || || | ||| | |||||| || Sbjct 153205 ATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTGATGCACGGAATGGTGTCGATCGCGTCG 153264 Query 127757 AAGAG 127761 ||||| Sbjct 153265 AAGAG 153269 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| || || || |||||| || || ||||| | || |||||| Sbjct 155473 CCTTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTGAGCCCAGGCATCAAGCCACGCTTC 155414 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || ||||| ||||||||||| ||||| ||| ||||| Sbjct 155413 TTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACAGCGGCGAAG 155354 Query 127658 GCAAATAGACGCTC 127671 |||| |||||||| Sbjct 155353 GCAATGAGACGCTC 155340 >seq1328 Length=41146 Score = 93.3 bits (102), Expect = 5e-14 Identities = 205/297 (69%), Gaps = 18/297 (6%) Strand=Plus/Plus Query 176671 ATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACATCTTGATAATCCTTAC 176729 ||||||||| | ||| || || || ||||| ||||| | || ||| || |||||| Sbjct 28511 ATCCGTCATGAGCATCAGACGTCCGTAGCGCAAGCT-GTTCACGTCTGTGTACTCCTTAT 28569 Query 176730 CTTGTTGAAGACCCAAAATCTTCTTGA-GATCATTGAACT-CTTGGTT-----TGATGTG 176782 || || | |||| ||||||||||| | || |||| | | | ||| |||| || Sbjct 28570 TGTGCTGCAAGCCCATAATCTTCTTGATGTTC--TGAATTTCCTCGTTCTTCATGATCTG 28627 Query 176783 AGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCG 176842 || || | ||||||||||| || ||| || ||||| ||||| |||||| Sbjct 28628 -GTCATGCTTC----GCGTCGCGGACGTTCAGCAGCTTTCCACGGAGCGGGAAGACACCG 28682 Query 176843 TAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCC 176902 ||| || |||||||| ||| ||| ||||||| || | | | | || || |||||| Sbjct 28683 AAGTTGTCGCGACCAACGACACCGAGGCCAGCAATAGCCAACGCCCTGGCAGAGTCACCC 28742 Query 176903 TCCGTCACGATGAGCGTACACTTTCCAGAT-TGTGCCGTCCCCGCCTTGTTCGCATC 176958 || || | ||| || ||||| | ||||| | || | || ||||| |||||||| || Sbjct 28743 TCAGTGAGGATAAGGGTACAATCTCCAGCTCTGCG-TGTGCCCGCATTGTTCGCGTC 28798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613493925237960