Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1277 141 2e-28 seq561 136 9e-27 seq318 95.1 3e-14 >seq1277 Length=70460 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||||||| || |||||||| |||| ||||||||| | | || Sbjct 15803 CGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTG 15862 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||||||||| ||||| || || || || Sbjct 15863 CGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCC 15922 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | || || || | Sbjct 15923 TCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAACCTCGAGG 15982 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || || || || Sbjct 15983 GTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 16020 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| ||||||||||| |||| ||||||||| | | || | || || |||| | Sbjct 15082 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAAC 15141 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || |||||||||||||||||||| ||| || || || ||||||||| Sbjct 15142 TGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATC 15201 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||||||| |||| ||||| | | || || |||| |||||||||||| || Sbjct 15202 TTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCG 15261 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || Sbjct 15262 GTGAGCGTCTTGACGAAGATCTG 15284 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || || |||||||| || | ||||||||| | ||| ||||| ||||| || | Sbjct 15588 CAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGA 15647 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || |||||||| | |||||||||||| || || || || ||||| | Sbjct 15648 GCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGA 15707 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||||||| |||| ||| || | | || || || | || || ||||| | Sbjct 15708 TCTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGC 15767 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || | || ||||| || || || Sbjct 15768 CGGTCAACGTCTTCACGAAGATCTG 15792 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| |||||| || | || ||| | ||| || Sbjct 15304 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCC 15363 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| | ||||||||||| || ||| || || || Sbjct 15364 TCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 15423 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | || || ||| Sbjct 15424 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTC 15483 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 15484 TTCCCCGTCAACGTCTTGACGAAGATCTG 15512 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| ||||||||||| || ||| | ||| || | ||||||||| ||||||| Sbjct 15386 ATCTTCGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCGGATTACAACATCCAGAAG 15327 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||||||||| || Sbjct 15326 GAGTCCACTCTTCACCTCGT 15307 >seq561 Length=237278 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || ||||||||||| |||| ||||||||| | ||| || | ||||| || | Sbjct 98106 CAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAA 98165 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||||||||| |||||||||||||||||||||||||| ||| || || ||||| | Sbjct 98166 GCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA 98225 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || |||| |||||| | | || || || | ||||| ||||| | Sbjct 98226 TCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGC 98285 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || | || || ||||| || || Sbjct 98286 CGGTCAAGGTCTTGACAAAGATCTG 98310 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| | | ||| | || || Sbjct 97821 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 97880 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || |||||||| |||||| || || || ||| Sbjct 97881 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCC 97940 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | ||||||||| Sbjct 97941 TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTC 98000 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || || || || || Sbjct 98001 TTACCCGTCAGGGTCTTGACGAAGATCTG 98029 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||||||||| || |||||| |||| ||||||||| | | || Sbjct 97584 CGGAGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 97643 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| |||||| ||||||||||| || ||||||||||| || || || Sbjct 97644 CGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCC 97703 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||||| | | || || |||| | Sbjct 97704 TCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGC 97763 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || || || || || Sbjct 97764 GTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTG 97801 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||| ||| || ||||||||||| |||| ||||||||| | |||||| | |||||||| | Sbjct 92832 CAATGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGA 92891 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || ||||||||||||||||| || || | | || || || |||| Sbjct 92892 GCTGCTTGCCAGCGAAGATGAGACGCTGGGTGTTTGGCGCAGTGCCCTCCTTGTCATGAA 92951 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 ||||| ||||||| ||||| ||||| | | | |||| ||||| ||||| | Sbjct 92952 TCTTTGCCTTCACGTTTTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGC 93011 Query 199602 CCGTGAGAGTTTTCACAAAAATTTGG 199627 | || | || || || || || ||| Sbjct 93012 CGGTCACGGTCTTGACGAAGATCTGG 93037 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| |||||||| || |||||| |||| |||||| || | | || | || || Sbjct 95761 CATGACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTC 95820 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT-TCCTTCTCGCT 199535 |||||| |||| |||||||||||||||||| ||||| | || ||| || | | Sbjct 95821 CTCCAGCGGCTTGTTGGCGAAGATGAGACGCTGTTGGTCGGACGGGATCGCCTCCTTG-T 95879 Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 |||| ||||| ||||||| ||| ||||| | || | || ||||| | ||||| Sbjct 95880 CCTGGATCTTCGCCTTCACGCTGCCGATCGTGTCCGATGGCTTGACCTCCAAGGGGATCG 95939 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||| |||| || || || || ||||| Sbjct 95940 TCTGACCCATGAGGGTCTTGACGAATATTTG 95970 Score = 96.9 bits (106), Expect = 8e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || || |||||||| || | ||||||||||| | || | || || || | Sbjct 98386 CAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGCCCGTCCTCGA 98445 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||||| ||||||||||| |||||||||||||||||| Sbjct 98446 GCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCCGGA 98483 >seq318 Length=85141 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||||||||| |||||||| |||| ||||||||| | || Sbjct 71662 CGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTG 71721 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| ||||||||||| || ||||||||||| || Sbjct 71722 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGG 71771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178895453360977