Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq561 163 3e-35 seq1277 138 1e-27 seq318 102 9e-17 >seq561 Length=237278 Score = 163 bits (180), Expect = 3e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || || | || |||||||| ||||| |||||||| || || ||||| | Sbjct 97589 ACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 97648 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||||||||||||||| |||| |||||||||||||| ||| | | |||||| Sbjct 97649 GTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTT 97708 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||||| ||| | ||| | | | |||||| || || || |||| ||||| Sbjct 97709 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGA 97767 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||||||||||||| || || ||||| ||||| Sbjct 97768 TCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 97804 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||| ||||| Sbjct 97841 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 97900 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||| || | || | | |||||||||| |||||| ||||| ||| Sbjct 97901 GATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGA-CGT 97959 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | ||||| || || |||||||| || || | Sbjct 97960 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGA 98019 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 98020 CGAAGATCTGCAT 98032 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | ||||| | || || |||||||| || ||||| Sbjct 98122 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 98181 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||||| ||||| | Sbjct 98182 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 98241 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || || | |||||||| ||||| |||| || || || Sbjct 98242 GTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 98301 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 98302 AAAGATCTGCAT 98313 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | ||| || | || |||||||||||||| ||||| Sbjct 92848 CTCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGAGCTGCTTGCCAGCGAA 92907 Query 46462 TATCAAGCGCT-GCTGGTCGGCCGGCA-CGCTCTCCTTGTCCATG-ATCTTCTTCTTGAG 46518 || | |||| | || | ||| ||| || |||||||| |||| ||||| ||| | Sbjct 92908 GATGAGACGCTGGGTGTTTGGC--GCAGTGCCCTCCTTGT-CATGAATCTTTGCCTTCAC 92964 Query 46519 CGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| | |||| |||||||| ||||| |||| || || Sbjct 92965 GTTTTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGCCGGTCACGGTCTT 93024 Query 46579 AACAAAGATTTG 46590 || ||||| || Sbjct 93025 GACGAAGATCTG 93036 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 46410 GGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGC 46469 |||| ||||| || || || ||||| ||||| || ||||||| ||||||| | | || Sbjct 93683 GGATGTTGTAATCCGAGAGCGTGCGATCGTCCTCTAGCTGCTCTTCGGCGAACTTGATGC 93742 Query 46470 GCTGCTGGTC-GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-AC 46527 ||||||||| |||||| | || |||||| | |||||| |||| || ||| | Sbjct 93743 TCTGCTGGTCGGGCCGGGTCCCT-TCCTTGGTCTGAATCTTCGCTTTGA-CGCTGCCGAT 93800 Query 46528 CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587 |||||| || | || |||| ||||| || || |||| || || || || ||||| Sbjct 93801 CGTGTCCAACGGCTTGACCTCCAGGGTGATCGTCTTCCCCGAGAGGGTCTTGACGAAGAT 93860 Query 46588 TTGCAT 46593 |||||| Sbjct 93861 TTGCAT 93866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || |||||| |||| ||||||||||| |||||||| Sbjct 98402 CTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAA 98461 Query 46462 TATCAAGCGCTGCTGGTC 46479 || | ||||||||||| Sbjct 98462 GATAAGACGCTGCTGGTC 98479 >seq1277 Length=70460 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || |||||||| |||| || | ||||||||||||||| Sbjct 15324 CTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAA 15383 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | | ||||||||| ||||||| ||||| ||| Sbjct 15384 GATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTGA-CGT 15442 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| || || || || | || ||||| || ||||||| ||| || | Sbjct 15443 TGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGA 15502 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 15503 CGAAGATCTGCAT 15515 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || | |||||| || || || Sbjct 15096 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCAAA 15155 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||| ||| |||||| ||| | ||| Sbjct 15156 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTTCA-CGT 15214 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| || ||||| |||| |||||| || || || || ||||| || | Sbjct 15215 TGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTGA 15274 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 15275 CGAAGATCTGCAT 15287 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || | || | | || |||||||||||||| ||||| Sbjct 15604 CTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAA 15663 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||||| ||| | || |||||||||| ||||||| ||| | ||| Sbjct 15664 GATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 15722 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || ||| || || || || | || ||||| ||||| |||| ||| || | Sbjct 15723 TGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCA 15782 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 15783 CGAAGATCTGCAT 15795 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || |||||| | || || ||||||||||||||||| Sbjct 15832 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAA 15891 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | || |||||||||| ||||||| ||| | | Sbjct 15892 GATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 15951 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| || || || | ||||| || |||||||| || || || || Sbjct 15952 GTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 16011 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 16012 GAAGATCTGCAT 16023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||| | || |||||| ||||| |||||||| | Sbjct 16023 TGCCTCCGCGAAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 16082 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || |||| |||||||||||||| || || |||| |||||||||||||| || Sbjct 16083 AAAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCG 16142 Query 46485 GCACGCT 46491 | | ||| Sbjct 16143 GGATGCT 16149 >seq318 Length=85141 Score = 102 bits (112), Expect = 9e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| || | ||| |||||| ||||| ||||||||| || ||||| | Sbjct 71667 ACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCC 71726 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || |||||||||||||||||||| |||| |||||||||||||| Sbjct 71727 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGG 71770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226169654120