Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq145 181 1e-40 seq928 122 1e-22 seq30 116 5e-21 seq571 89.7 7e-13 seq865 82.4 1e-10 >seq145 Length=93702 Score = 181 bits (200), Expect = 1e-40 Identities = 257/359 (72%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||||| || || || || |||||||| Sbjct 52697 TCGAAGTCCTCACCACCAAGGTGGGTGTCACCAGCGGTGGCCTTAACCTCGAAGATACCC 52756 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || ||||| || || || || || || || || ||||| || Sbjct 52757 TCCTCGATGGTCAGGAGAGACACATCGAAGGTTCCTCCGCCGAGATCGAAGATGAGAACA 52816 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | | ||||| ||||||||||||||||| || || || || || || Sbjct 52817 TTACGCTCGCCGACGGTCTTCTTGTCGAGACCGTACGCGATGGCGGCTGCTGTGGGCTCG 52876 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || |||| || |||| || || || | || || | ||||| |||||||| || || Sbjct 52877 TTGATGATACGGAGGACA-TTAAGACCGGAGATGGTGCCGGCATCCTTCGTCGCCTGACG 52935 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||||| ||||| ||||| || ||||| || ||||| ||| ||||| | ||||| Sbjct 52936 TTGCGAGTCGTTGAAGTACGCGGGGACGGTGACGACGGCGGAGGTGACGGTGCCGCCGAG 52995 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 || || || |||| || ||||| || || || | ||| || || ||||| |||| || Sbjct 52996 GTAAGACTCGGCGACCTCCTTCATCTTCGTGAGGATCATGGAGGAGATCTCCTCAGGCG 53054 Score = 120 bits (132), Expect = 4e-22 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980 ||||| |||||| | ||||| |||||||| || || || || ||||| | ||||||||| Sbjct 53218 GTCCGCAAACTTGCGGCCGATGAGACGCTTCGCGTCGAAGACGGTGTTGTGGGGGTTCAT 53277 Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040 || ||||||||||| | ||| ||||| | || | | | || || || ||||| Sbjct 53278 CGCGACCTGGTTCTTCGCGGAGTCACCGATCA-ACCT--CTCGGTGTCGGTGAAGGCGAC 53334 Query 8041 GTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTG 8100 ||| || || || || || || || |||||||| || || || || || || || ||||| Sbjct 53335 GTAGGAGGGTGTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCAACACGATCATTTTG 53394 Query 8101 CCAGACGCCGACGCA 8115 |||||| |||||||| Sbjct 53395 CCAGACACCGACGCA 53409 >seq928 Length=53956 Score = 122 bits (134), Expect = 1e-22 Identities = 230/338 (68%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||||||||| | ||| || || || |||||||| || || |||| || Sbjct 39008 TCGAAGTCTTCACCACCAAGGTGAGTGTCACCAGCGGTCGCCAGCACCTCGAAGACGCCG 39067 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | || ||||| || || |||||||| || || | | || | Sbjct 39068 TCGTCGATAGACAGGAGAGAGACATCGAAGGTTCCACCACCGAGATCGTAGACGATGATC 39127 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | ||| || | ||||| || |||||||| ||||| || || || || || || Sbjct 39128 TGAGACTCGCCGCC---CTTCTTGTCAAGACCGTAGGCGATCGCGGCTGCGGTAGGCTCG 39184 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| ||| | ||||| || || || | || || |||||||| || || Sbjct 39185 TTGATGATACGGAGAACCTGGAGGCCGGCGATGGTGCCAGCGTCCTTCGTCGCCTGACGC 39244 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| ||||| || ||||| |||| ||||| | | ||||| Sbjct 39245 TGAGCGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGAGTGACCTGCCGTCCGAGG 39304 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 || | || ||| | || ||||| ||| || ||||| Sbjct 39305 TAGGCCTCGGCGGTCTCCTTCATCTTGCCCAGGACCAT 39342 >seq30 Length=123721 Score = 116 bits (128), Expect = 5e-21 Identities = 201/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 ||||||| |||||| | ||||| || ||||||||||| || || || || || || Sbjct 61285 GAAGTGTTCAAGGAGGTTGTTGTCGAAGTCCTCACCACCCAAATGGGTGTCACCAGCAGT 61344 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 ||| ||||| | |||| ||| || ||||| | | ||| ||||| || || || || Sbjct 61345 CGCCTTGACGGCGAAGACACCACCAGTGATGTTCAGGAGCGACACATCGAAAGTTCCTCC 61404 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTAC 7612 ||||| ||| || ||||| |||||| | || ||| ||| | || |||||||| Sbjct 61405 ACCCAAGTCGAAGATGAGGACGTTCTTCTC--CGTGCTTGATTGGCGGTCAAGACCGTAA 61462 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 || || || || || || || || || || ||||| || | |||||||| || | Sbjct 61463 GCAATGGCGGCGGCGGTAGGCTCGTTGATGATACGGAGGACCTCGAGGCCAGCGATGGAA 61522 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | ||||| || || || | || || || ||||| |||||||| || || Sbjct 61523 CCAGCATCCTTGGTGGCCAGACGCTGGGAGTCGTTGAAGTAGGCAGGAAC 61572 >seq571 Length=51678 Score = 89.7 bits (98), Expect = 7e-13 Identities = 204/307 (66%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 || || || || || ||||| ||||||||||| || || ||||| ||||| | || Sbjct 15027 TTCTACCAAGCTTCGACATCCGAGCTCTACGGCAAGGTCGTCGAAACGCCACAGAGCGAG 15086 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563 | || ||||| |||||||| || || || || || || || | || | ||| Sbjct 15087 ACCACGCCGTTCTACCCGCGCTCTCCCTACGGCGTCGCCAAGCTCTACGGCTTCTGGATC 15146 Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623 || || || || | || | ||||| |||| | ||||| || || | ||||||||| Sbjct 15147 ACTGTCAACTACCGCGAGGCGTACGGCATGTACTCGTGCAACGGGATCCTCTTCAACCAC 15206 Query 22624 GAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAAT 22683 || || || | || || | |||||||| || ||||| | | || || || || Sbjct 15207 GAGTCGCCACGCCGTGGGCGGACGTTCGTGACCCGCAAAATTTCGCGCGCTGCGGCCGAT 15266 Query 22684 ATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGG 22743 ||| || || || || | ||||| || ||||| |||||||| || |||||| Sbjct 15267 ATCTCCCTGGGCAAGCAGTCGTGCCTGTACCTGGGCAACCTCGATGCGAAGCGTGATTGG 15326 Query 22744 GGTCATG 22750 || |||| Sbjct 15327 GGACATG 15333 >seq865 Length=134895 Score = 82.4 bits (90), Expect = 1e-10 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 105825 GTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGT 105884 ||||| || | ||||| || ||||| ||||||||| ||| || || || | || Sbjct 114559 GTGAATGTTGATACCAATGCCACCAGCGGTCTTACTGATGTTCGCGCAGTCCTTGAGCGT 114618 Query 105885 ATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTG 105944 |||||| || ||||| ||| ||||| ||| | |||||| ||||| || || Sbjct 114619 CGAGTAAATGCCCTCGATGGAATCGTCCTTCATCGACACCAGGAAGCACGAGCTCAGCTG 114678 Query 105945 TGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAA 105992 || ||||||||||||| ||||||| |||||| | ||||| |||| Sbjct 114679 GGGGTTGGGTGTACCAGCGTTGAACAAAGTTGGCGAAGCATGGGTGAA 114726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119057314040