Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1532 107 2e-18 seq1328 87.8 2e-12 >seq1532 Length=168184 Score = 107 bits (118), Expect = 2e-18 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || || || || ||| | || |||| || || | ||||| || || ||||| || Sbjct 155250 CTGTTCGATGCTATCGATACCATTCCTTGCATCAAGAAGAAGGCCGACTGGGCCCTGCGC 155309 Query 102150 TGGTT-TGATACAA--AGTC-GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 102205 ||| | | |||| |||| |||||| ||||||| ||| | || || || ||| Sbjct 155310 TGGATCTCCGACAAGGAGTCTGCGTTCT----CTGAGCGTCTCATTGCCTTCGCCGCTGT 155365 Query 102206 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 102265 ||||| ||||||||||| || || ||| | | || | |||||||||||||| || | Sbjct 155366 CGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCTT 155425 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||| || ||| ||||||||||||||| |||||||| ||||| || Sbjct 155426 GATGCCTGGGCTCACCTTCTCCAACGAGCTGATCTCTCGCGACGAAGG 155473 Score = 102 bits (112), Expect = 1e-16 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| || || ||| | || |||| || || | ||||| || || ||||| || Sbjct 153269 CTCTTCGACGCGATCGACACCATTCCGTGCATCAAGAAGAAGGCAGACTGGGCGTTGCGC 153210 Query 102150 TGGTTTGATACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| | | || | ||| ||| || || ||||| ||| |||| || || || Sbjct 153209 TGGATCG---CAGACGAGCGCTCCGTCTTCGCCGAGCGGCTCGTCGCGTTCGCCGCCGTC 153153 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 102266 ||||| ||||||||||| || |||||| ||| || | |||||||||||||| || ||| Sbjct 153152 GAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGACTC 153093 Query 102267 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 102326 ||||| || | ||||| |||||||| ||| || |||||||| | ||| || Sbjct 153092 ATGCCGGGCTTGACGTTCTCGAACGAGCTCATCAGCCGCGACGAGGGCATGCACACCGAC 153033 Query 102327 TTTGCG 102332 |||||| Sbjct 153032 TTTGCG 153027 >seq1328 Length=41146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970 ||| ||||| || |||||||||||| ||| ||||||||||| ||| ||| || |||| Sbjct 28658 CTTTCCACGGAGCGGGAAGACACCGAAGTTGTCGCGACCAACGACACCGAGGCCAGCAAT 28717 Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGAT-TGTG 177029 || | || | ||||| |||||||| || | ||| || ||||| | |||| | || | Sbjct 28718 AGCCAACGCCCTGGCAGAGTCACCCTCAGTGAGGATAAGGGTACAATCTCCAGCTCTGCG 28777 Query 177030 CCGTACCCGCCTTGTTCGCATC 177051 || ||||| |||||||| || Sbjct 28778 -TGTGCCCGCATTGTTCGCGTC 28798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728968686320