Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1277 147 5e-30 seq561 134 3e-26 seq318 84.2 5e-11 >seq1277 Length=70460 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || || || |||||||| | ||||| | || || || Sbjct 15307 ACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCC 15366 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| | || || |||||||| ||||| || || |||||||| Sbjct 15367 AACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 15426 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| ||| || || || ||||||| ||||| Sbjct 15427 ATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTC 15486 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 15487 CCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| || ||||| || ||||| ||||| || | | || || ||||| |||| Sbjct 15588 CAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGA 15647 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || |||||||| | || || ||||| || || ||||| || ||||| || | Sbjct 15648 GCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGA 15707 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||| ||||| || ||||| || ||| || || || ||||||| ||||| | Sbjct 15708 TCTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGC 15767 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || ||||| | ||||| Sbjct 15768 CGGTCAACGTCTTCACGAAGATCTGCAT 15795 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | |||||| || Sbjct 15815 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCCTCA 15874 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 15875 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 15934 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||||||||| || || || ||||| | |||||| Sbjct 15935 ATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTG 15994 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 15995 CCCGTGAGGGTCTTGACGAAGATCTGCAT 16023 >seq561 Length=237278 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | |||||| | || || ||| Sbjct 97824 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 97883 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || ||||| || || || ||||| ||| Sbjct 97884 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGA 97943 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || || || || ||||| | |||||| Sbjct 97944 ATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTA 98003 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 98004 CCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 107 bits (118), Expect = 4e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||| ||| || || ||||| || || || ||||| |||| | ||||| |||||||||| Sbjct 92832 CAATGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGA 92891 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || |||||||| || || || || ||| | | |||| || ||||| |||| Sbjct 92892 GCTGCTTGCCAGCGAAGATGAGACGCTGGGTGTTTGGCGCAGTGCCCTCCTTGTCATGAA 92951 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | ||| ||| ||||| || || ||||| || | || ||||| | ||||| | Sbjct 92952 TCTTTGCCTTCACGTTTTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGC 93011 Query 195113 CTGTCAAAGTTTTTACGAA 195131 | |||| || || ||||| Sbjct 93012 CGGTCACGGTCTTGACGAA 93030 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||| || |||||||| || ||||| ||||| || | || || | ||| || |||| Sbjct 98386 CAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGCCCGTCCTCGA 98445 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 ||||||| || ||||||||||| || || ||||| ||||| |||| Sbjct 98446 GCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGGATGC 98490 >seq318 Length=85141 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| ||| || || | ||||| ||| Sbjct 71674 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCG 71733 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||||||| || |||||||| || || || ||||| || ||||||| Sbjct 71734 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGC 71779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109456993431677