Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq590 111 1e-19 >seq590 Length=36723 Score = 111 bits (122), Expect = 1e-19 Identities = 208/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 ||||||||| ||| | | ||||||||| | ||| |||| || | | || | | Sbjct 25449 GGGGTTCCACGCGGAGAGGATGATGCGGCGGTCGGTGGGGTCGTGCTTTATCTTGCGAAT 25508 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACT 30163 | | || ||||| || || ||| | |||| ||| || || | || |||| ||| Sbjct 25509 GCACTCCTGGAGCTGGTCAACGCCCTTGCCCGTGTATTCCGCGTCGCA-GTCCTCATACG 25567 Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 || || || |||| ||||||||| ||||| || || || ||||| ||| | || || Sbjct 25568 AGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGCCCGAGGTCGCCCGCGCGCCGGT 25627 Query 30224 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30283 | | | ||| | ||| || | || || |||| ||||| ||||||||||||| | | Sbjct 25628 GGCCCAGGCCGCGCTTCTCGAGGAACTCCTTGGAGCCGTTACCGTCCCAGATCTTGATGC 25687 Query 30284 CCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30343 |||| ||||||||| |||||| ||| | ||| |||||||| || | |||||| | Sbjct 25688 CCTTGGCGGAGAGCTGCGTGGAGTCGGTGCAGCCTTGAACGAACCAGAGTAACTCCTCGA 25747 Query 30344 CGA 30346 ||| Sbjct 25748 CGA 25750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608979573263