Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq561 100 2e-16 seq1277 96.9 3e-15 >seq561 Length=237278 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||||||||| || || || ||||| || || || | || |||| ||||||||| Sbjct 97602 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAACTGC 97661 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || || | || | ||||||||||| ||||| Sbjct 97662 TTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTC 97721 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||| ||||||| ||| ||||| || |||||| Sbjct 97722 GCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTGCCCGTC 97781 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 97782 AGCGTCTTGACGAAGATCTGCAT 97804 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||| | || || || ||| || || || ||||| || || Sbjct 97805 GCCGCCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 97864 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| || | |||||| || || || ||||| ||||| ||||||| || Sbjct 97865 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGG 97924 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| || || | | | || |||| ||| || Sbjct 97925 GATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGAC 97984 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || ||||| || ||||||| || || || || |||||||| Sbjct 97985 CTCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 >seq1277 Length=70460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || |||||||| || ||| | || |||| ||||||||| Sbjct 15313 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTGC 15372 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| ||||| || || | ||||| ||||||||||| ||||| Sbjct 15373 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 15432 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||| ||||| | ||||| || || |||||| Sbjct 15433 GCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGTC 15492 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 15493 AACGTCTTGACGAAGATCTGCAT 15515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || || || | || |||| ||||||||| Sbjct 15085 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGC 15144 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| || || | || | ||||||||| || |||||| Sbjct 15145 TTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTC 15204 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | || || | ||||||||||| ||| ||||| || || || Sbjct 15205 GCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTG 15264 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 15265 AGCGTCTTGACGAAGATCTGCAT 15287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380929563526113