Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1532 268 2e-66 >seq1532 Length=168184 Score = 268 bits (296), Expect = 2e-66 Identities = 396/559 (71%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| ||| || |||||| |||||| ||||||||| || ||| ||| ||||||||| Sbjct 155502 AGAGCAAGCACGCGAAGTCCGTGTGCATGCCTTCGTCGCGAGAGATCAGCTCGTTGGAGA 155443 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||| |||||||| | || | || ||||||||||| || | ||||||||||| | Sbjct 155442 AGGTGAGCCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGG 155383 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||||||||| || || ||||| || |||| | ||| ||| | || | || Sbjct 155382 AGAAGAAGATGCCCTCGACAGCGGCGAAGGCAATGAGACGCTCAGAGAACGCAGACTCCT 155323 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| ||||||||| || |||||||| ||||||||||||||||| || || || || | Sbjct 155322 TGTCGGAGATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTATCGA 155263 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 | || ||| || | || ||| | |||| | ||||| |||| ||| Sbjct 155262 TAGCATCGAACAGGCGTTCGCGCTCCTGGGGGTCCTTGATGTAGGTGTCGATGAGGAGC- 155204 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| |||| ||||| | ||||| || ||||||||| || |||||| | | Sbjct 155203 --GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCAGCGAG 155146 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 ||||| | || || || ||||||| | ||| | |||||||| ||||| || || | Sbjct 155145 CCTCAGCAGCTTGGACCTCGTTGGAGAACCGCTCGACGAGATTCTCGTTGACGATGCCGT 155086 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA- 48598 | || || || ||||| || || || || | ||| |||||||||| | ||||||| Sbjct 155085 CCGAGGCGGCGAAGAACGCGAGAACGTGCGAGACGAAGTGGCGCTCGTCATTGGTGAGAC 155026 Query 48599 --GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 |||||| | || | ||| ||| || |||| || ||| | ||||| ||||||| Sbjct 155025 GGTTGTTCCAGTCGTGCATGTCCTTGGAGAGATCCATCTCCTCCGCGGTCCAAAAGGACG 154966 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || || |||||||| Sbjct 154965 CCTCAGCCTTCTTGTACAT 154947 Score = 253 bits (280), Expect = 4e-62 Identities = 336/463 (73%), Gaps = 10/463 (2%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||||| ||| ||||| |||||||||||| |||| ||||| | Sbjct 153025 CACGCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTCGAGAACGTCAAG 153084 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||||| || | || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 153085 CCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAG 153144 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAAGCGTTCTTGTCTG 48308 |||||||| || || ||||||||| ||||| ||| ||| | | |||| || ||||| Sbjct 153145 ATGCCCTCGACGGCGGCGAACGCGACGAGCCGCTCGGCGAAGACGGAGCG--CTCGTCTG 153202 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| | ||||||||||||||||||||||||||| || || || || || || Sbjct 153203 CGATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTGATGCACGGAATGGTGTCGATCGCGT 153262 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 |||||| | || || | | ||| | ||||| |||| ||| | || Sbjct 153263 CGAAGAGGTAGGCGCGTTCTGCGGGGTCGCGGATGTAGGTGTCGATGAGGAGC---GAGT 153319 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | |||| ||||| || || || || ||| ||||| ||||||||| | |||||| Sbjct 153320 ATGTCTCGGAGTGTACGTTTTCCATCATGATTTGGAAGCCGTAGAAGCAGCGGGCCTCCG 153379 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 ||||||| || ||||||| | ||| | |||||||| |||||||| || ||||||| Sbjct 153380 CGGCCTGCACCTCGTTGGAGAACCGCTCGACGAGATTCTCGTTGACTATGCCGTCTGAAG 153439 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTT 48588 | || |||||||| || || | | ||| || |||||||| Sbjct 153440 CGGCGAAGAAGGCGAGCACGTAGGAGATGAAGTGTCGCTCGTT 153482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931512643959040