Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1532 203 6e-47 seq636 91.5 3e-13 >seq1532 Length=168184 Score = 203 bits (224), Expect = 6e-47 Identities = 439/653 (67%), Gaps = 18/653 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||||||| | || |||||||| || ||||| ||||| Sbjct 154938 ATTTGGCAGATGTACAAGAAGGCTGAGGCGTCCTTTTGGACCGCGGAGGAGATGGATCTC 154997 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||||||| ||| |||| || ||| |||| ||||||| || || || | Sbjct 154998 TCCAAGGACATGCACGACTGGAACAACCGTCTCACCAATGACGAGCGCCACTTCGTCTCG 155057 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||||||||||| |||| | Sbjct 155058 CACGTTCTCGCGTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAATCTCGTCGAGCGG 155117 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| ||| || || || | ||||| || ||||| || |||||||| || Sbjct 155118 TTCTCCAACGAGGTCCAAGCTGCTGAGGCTCGCTGCTTCTATGGCTTCCAGATCATGATG 155177 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| || | ||| || || || ||||| | ||| | Sbjct 155178 GAGAACATCCACTCCGAGACCTACTC---GCTCCTCATCGACACCTACATCAAGGACCCC 155234 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||| | || || ||||| | ||| ||||| ||| || ||||||||| |||||| Sbjct 155235 CAGGAGCGCGAACGCCTGTTCGATGCTATCGATACCATTCCTTGCATCAAGAAGAAGGCC 155294 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 |||||| || |||||| | | || || |||| ||||| || | ||| Sbjct 155295 GACTGGGCCCTGCGCTGGATCTCCGACAAGGAGTCTGCGTTCTCTGAGCGTCTCATTGCC 155354 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 || || ||||| ||||||||||| ||| ||| || || || ||||||||||||||||| Sbjct 155355 TTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAG 155414 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| ||||| ||| ||||||||||| ||| | ||||| || Sbjct 155415 AAGCGTGGCTTGATGCCTGGGCTCACCTTCTCCAACGAGCTGATCTCTCGCGACGAAGGC 155474 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA- 26069 | |||| || || || ||| |||||| || ||||| || | | | | | || Sbjct 155475 ATGCACACGGACTTCGCGTGCTTGCTCTTCA---GCCAC---CTGAAGAGGCGTCCCCAC 155528 Query 26070 --AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || ||| || |||||||| ||||| || ||||| ||| ||||||| Sbjct 155529 CCCGATGTTGTCCTCACGATCATCAAGGAGGCCGTCGAGATTGAGCAGGAGTT 155581 Score = 201 bits (222), Expect = 2e-46 Identities = 393/570 (69%), Gaps = 17/570 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| |||||||||||| || ||| || |||||| | ||| |||||| | || Sbjct 153581 ATATGGCAGATGTACAAGACCGCCCAAGCGTCGTTCTGGACGGTCGAGGAGATTAACCTC 153522 Query 25537 GCCAAGGA---CATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | | || ||||||| | | || || | | |||||| || || || Sbjct 153521 TCATACGATCTCATGGACTGGAGCGACAAGCTGAACGATAACGAGCGACACTTCATCTCC 153462 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||||| | || ||||| || || || || || ||||| ||||||||||| |||| | Sbjct 153461 TACGTGCTCGCCTTCTTCGCCGCTTCAGACGGCATAGTCAACGAGAATCTCGTCGAGCGG 153402 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| ||| || |||||| || ||||||| || |||||||| ||||| || || Sbjct 153401 TTCTCCAACGAGGTGCAGGCCGCGGAGGCCCGCTGCTTCTACGGCTTCCAAATCATGATG 153342 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 ||||| || ||||| ||| || | ||| || || || ||||| ||| | Sbjct 153341 GAAAACGTACACTCCGAGACATACTC---GCTCCTCATCGACACCTACATCCGCGACCCC 153285 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 || || | | || || | || ||||| ||| || ||||||||| |||||| Sbjct 153284 GCAGAACGCGCCTACCTCTTCGACGCGATCGACACCATTCCGTGCATCAAGAAGAAGGCA 153225 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTT--GGCGAGCGGCTGGTAG 25888 ||||| || |||||| ||| | ||||||| ||| | | ||||||||| || | Sbjct 153224 GACTGGGCGTTGCGCTGGATCG-CAGAC-GAGCGCTCCGTCTTCGCCGAGCGGCTCGTCG 153167 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 | || || || || ||||||||||| ||| ||| || || || |||||||||||||||| Sbjct 153166 CGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTCA 153107 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGA 26006 || || | |||| |||||| ||||| || || || ||||||||||||||| | ||||| Sbjct 153106 AGAAGC-GCGGACTCATGCC-GGGCTTGACGTTCTCGAACGAGCTCATCAGCCGCGACGA 153049 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 ||| | |||| || ||||| || || || Sbjct 153048 GGGCATGCACACCGACTTTGCGTGTCTCCT 153019 >seq636 Length=11643 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 222044 AAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCG 222103 || || || || ||||| ||||| | || ||||| | || || |||||| |||| Sbjct 7240 AAAAGATCGGGTATCCAGAGCGCGTAGAACAGATCGCGGGCACGGACTTCCTCCTTGCCG 7181 Query 222104 TTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACG 222163 | ||| || | |||||| | ||||| || | ||||||||||| ||||| || |||| | Sbjct 7180 TGGTTCTTGCGCAGATCAATGAACTCGAAGACATCAGCGTGCCAGGGCTCAAGGTAGATG 7121 Query 222164 GCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | || ||||| || | |||||| |||||||| || Sbjct 7120 GCGAATGCTCCGGGGCGTTCGTTGCCCCCCTGATCGAC 7083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928824702120640