Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1277 190 3e-43 seq561 167 3e-36 seq145 129 8e-25 seq928 118 1e-21 seq30 113 6e-20 seq318 102 1e-16 >seq1277 Length=70460 Score = 190 bits (210), Expect = 3e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| Sbjct 16023 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 15964 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || ||||| ||||| || || |||||| Sbjct 15963 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 15904 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| || || || || || || |||||||| ||||| || |||||| | || |||||| Sbjct 15903 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTCTCGGACTACAAC 15844 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || |||||||| || | ||||| || ||| Sbjct 15843 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGCCTTCGTGGCGGT 15796 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| ||||| || | || || || || || ||||||||||||||||| | Sbjct 15797 GTATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTT 15738 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || ||||| ||| | || || ||||| || || ||||| ||||| || ||||| | Sbjct 15737 CCGATACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACC 15678 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || | || || ||||| || ||||| || ||||| | || | | || |||| Sbjct 15677 AGCAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACA 15618 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTG 172069 || |||| ||||||||||| || ||||||| Sbjct 15617 ACATTCAGAAGGAGTCTACCCTTCACCTTG 15588 Score = 152 bits (168), Expect = 7e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || | || || || || || ||||||||||| |||| Sbjct 15520 GTGGTATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACCATTACCCTCGAGGTCGAGT 15461 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| || ||||| ||||| ||||| || ||||| || | Sbjct 15460 CTTCCGACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAG 15401 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || || || || || ||| | || || ||||| || || | |||| Sbjct 15400 ACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCGGATT 15341 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 ||||| | || |||||||| ||||| ||||| || || Sbjct 15340 ACAACATCCAGAAGGAGTCCACTCTTCACCTCGTCCT 15304 >seq561 Length=237278 Score = 167 bits (184), Expect = 3e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || ||||| || || || || |||||||||||||| |||| Sbjct 98037 GTGGTATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATCACCCTCGAGGTCGAGT 97978 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| ||||| ||||| ||| |||| || |||||||| || ||||| || || || || | Sbjct 97977 CGTCCGACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCGG 97918 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 ||||||| || || || || || || || ||||| || || || || || || | || | Sbjct 97917 ATCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACT 97858 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 ||||| | || |||||||| || || ||||| || || Sbjct 97857 ACAACATCCAGAAGGAGTCGACCCTCCACCTCGTGCT 97821 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || || || || || ||||| || ||||||||||| || Sbjct 97804 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTTGAGTCCTCG 97745 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || ||||| || || ||||| || || || ||||| ||| Sbjct 97744 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 97685 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||| | || || || || || ||| | || |||||| Sbjct 97684 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACGCTCTCGGACTACAAC 97625 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||| || || |||||||| || | || || ||||| Sbjct 97624 ATCCAGAAGGAGAGCACGCTCCACCTTGTCCTGCGTCTCCGCGGTGG 97578 Score = 89.7 bits (98), Expect = 7e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||| || || ||||| | || || || |||||||| ||||| || ||| Sbjct 93868 GTATGCAAATCTTCGTCAAGACCCTCTCGGGGAAGACGATCACCCTGGAGGTCAAGCCGT 93809 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 ||||| |||| | | ||||||| |||||||| |||||||| | | ||||| | Sbjct 93808 TGGACACGATCGGCAGCGTCAAAGCGAAGATTCAGACCAAGGAAGGGACCCGGCCCGACC 93749 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| | | | || || | | ||||| || || | || || ||| | ||||||| Sbjct 93748 AGCAGAGCATCAAGTTCGCCGAAGAGCAGCTAGAGGACGATCGCACGCTCTCGGATTACA 93689 Query 172040 AC 172041 || Sbjct 93688 AC 93687 >seq145 Length=93702 Score = 129 bits (142), Expect = 8e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || || ||||| ||||||||||||||||| ||||| ||| | || ||||| || ||||| Sbjct 53409 TGCGTCGGTGTCTGGCAAAATGATCGTGTTGAGATCATCGCCAACGACCAGGGTAACCGC 53350 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || ||||| ||||| || || | || | | | || || |||| || Sbjct 53349 ACCACACCCTCCTACGTCGCCTTCACCGACACCGAGAGGTTGATCGGTGACTCCGCGAAG 53290 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || ||| || |||||||| ||| || ||||| |||||||||||||| || || ||| Sbjct 53289 AACCAGGTCGCGATGAACCCCCACAACACCGTCTTCGACGCGAAGCGTCTCATCGGCCGC 53230 Query 195512 AAGTTTTCGGA 195522 |||||| |||| Sbjct 53229 AAGTTTGCGGA 53219 >seq928 Length=53956 Score = 118 bits (130), Expect = 1e-21 Identities = 241/356 (68%), Gaps = 3/356 (1%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| ||||| || | ||||| || |||||||||||||| || || | | | | Sbjct 39360 CCCGAGGAAATCTCCGCCATGGTCCTGGGCAAGATGAAGGAGACCGCCGAGGCCTACCTC 39301 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || | | || || || || || || || ||||||| || | || || Sbjct 39300 GGACGGCAGGTCACTCACGCCGTCGTCACCGTCCCCGCCTACTTCAACGACGCTCAGCGT 39241 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 |||||||| |||||||||| | || || || || | ||| | || ||||| || Sbjct 39240 CAGGCGACGAAGGACGCTGGCACCATCGCCGGCCTCCAGGTTCTCCGTATCATCAACGAG 39181 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || ||||| |||||||| | ||| | | | | Sbjct 39180 CCTACCGCAGCCGCGATCGCCTACGGTCTTGACAAGAAGGGCGGCGAGTCTCAGATC--A 39123 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | | ||| |||||||||||||| || || |||||||| || || ||| || | || Sbjct 39122 TCG-TCTACGATCTCGGTGGTGGAACCTTCGATGTCTCTCTCCTGTCTATCGACGACGGC 39064 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || ||| || |||||||| ||||| || ||||||||||| ||||| Sbjct 39063 GTCTTCGAGGTGCTGGCGACCGCTGGTGACACTCACCTTGGTGGTGAAGACTTCGA 39008 >seq30 Length=123721 Score = 113 bits (124), Expect = 6e-20 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || || || || | ||| || ||||| |||| | | || || Sbjct 61572 GTTCCTGCCTACTTCAACGACTCCCAGCGTCTGGCCACCAAGGATGCTGGTTCCATCGCT 61513 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || | || | || ||||| || || || || || || |||||||| ||||| Sbjct 61512 GGCCTCGAGGTCCTCCGTATCATCAACGAGCCTACCGCCGCCGCCATTGCTTACGGTCTT 61453 Query 195842 GACAAGAA--CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 ||| | |||| ||| ||| | || || | ||||| || | ||||| || || | Sbjct 61452 GACCGCCAATCAAGCACGGAGA--AGAACGTCCTCATCTTCGACTTGGGTGGAGGAACTT 61395 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 | ||||| || || || || || |||||| | |||| || ||||| |||||||||| Sbjct 61394 TCGATGTGTCGCTCCTGAACATCACTGGTGGTGTCTTCGCCGTCAAGGCGACTGCTGGTG 61335 Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || ||| | |||||||| || ||||| Sbjct 61334 ACACCCATTTGGGTGGTGAGGACTTCGA 61307 >seq318 Length=85141 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || ||||| |||||||||||||||||||| || Sbjct 71941 ATGCAGATTTTCGTAAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCCTCG 71882 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || |||| |||||||| ||||| ||||| || Sbjct 71881 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG 71838 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 171965 GCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTA 172024 ||||||| ||||| ||||| || || || || || || || ||||| || ||||| || | Sbjct 71779 GCATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCA 71720 Query 172025 CCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGG 172084 ||||| || |||||| | || |||||||||||||| ||||| || || | || || | Sbjct 71719 CCCTCAGCGACTACAACATCCAGAAGGAGTCTACTCTCCACCTGGTGCTGCGTCTGCGTG 71660 Query 172085 GTGGTGC 172091 ||||||| Sbjct 71659 GTGGTGC 71653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657848165502320