Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1142 111 5e-19 seq1544 84.2 6e-11 >seq1142 Length=134542 Score = 111 bits (122), Expect = 5e-19 Identities = 180/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 |||||||| |||||||| ||| | || || ||||| ||||| || ||||| | ||| Sbjct 58994 CGACGCTGGATATAACCCGTTTCGGCGGTCTTGACAGCCGTATCGATGAGACCTTCGCGA 58935 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 ||| |||| || |||||||| | ||| | || || || | | | ||| |||| Sbjct 58934 CCAGCCATCGCGTGGAAGAAGAACTCCTGGGGAGTGAGTCCTCGCAAGTACGAGTTCTCG 58875 Query 302713 ACGAAACCACGCGCCTCGGGC--GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770 ||||| || || |||||||| ||| |||| ||| || || || || ||||| | || Sbjct 58874 ACGAAGCCGCGAGCCTCGGGACTGAA--GTCGTCCTTCGTGAAATGGGGAAGGGTGCGGT 58817 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC--CAGGCACGAAAT 302828 ||||| |||||||||||||||| || ||| ||||||||| || ||| | Sbjct 58816 GACGGAAGCCGAATGGGATACGCTTTCCCTCGACGGACTGCTGTCCGACACAGACGGA-- 58759 Query 302829 CATCTGCGAAATATT 302843 ||||||||| || || Sbjct 58758 CATCTGCGAGATGTT 58744 >seq1544 Length=70546 Score = 84.2 bits (92), Expect = 6e-11 Identities = 109/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| |||||||| |||||| || || || ||||||||||||||||| | | || | Sbjct 23730 CGATGGTCATACGGGAGGGAATGGCGTGCGGGTTGATGATGATGTCGGGCGTGATGCCCT 23789 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCCCTTTTGTC 251959 | || ||||| ||||| ||| |||| | || || | || ||||| ||||| |||| Sbjct 23790 CCGCCGTGAACGGCATGTCC---TCCTGGCGGTAGGTGATACCGATAGTACCCTTCTGTC 23846 Query 251960 CGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||| || |||||| || || || Sbjct 23847 CGTGACGTGAGGCGAACTTGTCGCCGAT 23874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471784957385347