Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1532 181 1e-39 seq827 134 2e-25 seq98 105 8e-17 seq865 96.9 4e-14 seq1328 95.1 1e-13 seq1342 93.3 5e-13 seq624 87.8 2e-11 >seq1532 Length=168184 Score = 181 bits (200), Expect = 1e-39 Identities = 211/284 (74%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||||| | ||||| || | | ||| |||||||| ||||||||| Sbjct 153046 CCCTCGTCGCGGCTGATGAGCTCGTTCGAGAACGTCAAGCCCGGCATGAGTCCGCGCTTC 153105 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||||| ||| ||| ||||| |||||||||||||||||||| || Sbjct 153106 TTGAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAAC 153165 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| |||||||||||| || | || || ||| | |||||| || ||||||| Sbjct 153166 GCGACGAGCCGCTCGGCGAA---GACGGAGCGCTCGTCTGCGATCCAGCGCAACGCCCAG 153222 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 || ||||| ||| | | |||| | |||||||| ||| ||||||| | | ||| Sbjct 153223 TCTGCCTTCTTCTTGATGCACGGAATGGTGTCGATCGCGTCGAAGAGGTAGGCGCGTTCT 153282 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || ||||| || ||||||||||| |||||||| || ||||| Sbjct 153283 GCGGGGTCGCGGATGTAGGTGTCGATGAGGAGCGAGTATGTCTC 153326 Score = 168 bits (186), Expect = 8e-36 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||| ||| ||||||| ||||||| |||||| ||||| |||||||| ||||||||| Sbjct 152677 CGCCATGGAGTACTCGGACACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGTGAGCGAGAT 152736 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || ||||| | ||||||||| | || ||||||||| |||| ||||||| | Sbjct 152737 CATGTCCATGAAGTCGAACGGGTTCGTCGCGCGGTAGTGCTTCTCGCTGCCGAGCGCGAC 152796 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||| Sbjct 152797 GAGCAGCCGGTCTGCGACGAACTCGATGTACTGGCACATCAGCTCGGCGTTCATGCCGAT 152856 Query 868870 GAGCGCCACCGGCAGCGACTC 868890 || | || ||||| | ||| Sbjct 152857 CAGAGAGACAGGCAGAGCCTC 152877 Score = 161 bits (178), Expect = 1e-33 Identities = 209/287 (73%), Gaps = 9/287 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||||||| ||||| |||||| |||| ||| || ||||| | ||| |||||| Sbjct 155473 CCTTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTGAGCCCAGGCATCAAGCCACGCTTC 155414 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | |||| ||| ||||| |||||||||||||| ||||| ||| Sbjct 155413 TTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACAGCGGCGAAG 155354 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 | ||||| ||||| | || | || |||||||| |||||| || ||| Sbjct 155353 GCAATGAGACGCTCAGAGAACG----CAG--ACTCCTTGTCGGAGATCCAGCGCAGGGCC 155300 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| ||| | | | || | || ||||| || || ||| | || Sbjct 155299 CAGTCGGCCTTCTTCTTGATGCAAGGAATGGTATCGATAGCATCGAACAGGCGTTCGCGC 155240 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || |||||||||| ||||||||||| |||||||| |||||||| Sbjct 155239 TCCTGGGGGTCCTTGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTC 155193 Score = 140 bits (154), Expect = 4e-27 Identities = 183/251 (73%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || |||||||||||| || ||| | |||| || ||||| Sbjct 155191 GAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCAGCGAGCCTCAGCAGCTTGG 155132 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| || |||||| || | || |||||| ||||||||||| ||||||||| Sbjct 155131 ACCTCGTTGGAGAACCGCTCGACGAGATTCTCGTTGACGATGCCGTCCGAGGCGGCGAAG 155072 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CG--ACACCCAGTGG 869809 || || || |||||| || |||||||||||||| | | |||| || ||||| | Sbjct 155071 AACGCGAGAACGTGCGAGACGAAGTGGCGCTCGTCATTGGTGAGACGGTTGTTCCAGTCG 155012 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||| | ||| |||| |||||| |||||||| | || ||||| ||||| ||| Sbjct 155011 TGCATGTCCTTGGAGAGATCCATCTCCTCCGCGGTCCAAAAGGACGCCTCAGCCTTCTTG 154952 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 154951 TACATCTGCCA 154941 Score = 138 bits (152), Expect = 1e-26 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| | ||| ||| ||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 155840 CGCCTTCGAGTAGTCGGACACGCGCTTCTCGAAGAAGTTCGTTTTGCCCTGGAGCGAGAT 155781 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 || ||||| | ||| ||||| | |||||| ||| || | ||||||| | Sbjct 155780 CATGTCCATGAAGTCGAAAGGGTTCGTGACGTTGTAGAACTTCTCTCCGCCGAGCGCAAC 155721 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 || || ||||| || || |||||||||||||||| |||||| ||||||||||||||| Sbjct 155720 CAGTAGACGGTCAGCAACGAACTCGATGTACTGGCGCATGAGCGTGGCGTTCATGCCGAT 155661 Query 868870 GAGCGC 868875 |||||| Sbjct 155660 GAGCGC 155655 Score = 89.7 bits (98), Expect = 6e-12 Identities = 173/253 (68%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | ||| || || ||| ||||||||||| ||| | |||| || | || Sbjct 153328 GAGTGTACGTTTTCCATCATGATTTGGAAGCCGTAGAAGCAGCGGGCCTCCGCGGCCTGC 153387 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| || |||||| || | || |||||| || |||||||| |||||||| Sbjct 153388 ACCTCGTTGGAGAACCGCTCGACGAGATTCTCGTTGACTATGCCGTCTGAAGCGGCGAAG 153447 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC--GACAC-CCAGTGG 869809 || || || |||| ||| ||||| ||||||| ||| | ||| | | | ||||| Sbjct 153448 AAGGCGAGCACGTAGGAGATGAAGTGTCGCTCGTTATCGTTCAGCTTGTCGCTCCAGTCC 153507 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | | ||| ||||| | ||||||| | ||||||| ||| || | ||| | ||| Sbjct 153508 ATGAGATCGTATGAGAGGTTAATCTCCTCGACCGTCCAGAACGACGCTTGGGCGGTCTTG 153567 Query 869870 TACATCTCCCATA 869882 ||||||| ||||| Sbjct 153568 TACATCTGCCATA 153580 >seq827 Length=87468 Score = 134 bits (148), Expect = 2e-25 Identities = 209/291 (72%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 ||||| |||||||||||||| || |||| | || || ||||||| | |||||| || Sbjct 49042 CCGTCCGTGCCGTTCTTGAACCCAATGGGGAACGACACGCCCGACGCAAGCTCGCGATGG 48983 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851 | |||||||||||||||||||||||| | ||||||||||| | ||||| || | || Sbjct 48982 AGCTGGCTCTCGGTCGTGCGCGCGCCGATGGCGCCCCACGAGATGAGGTCGGCGATGTAC 48923 Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAG 1726911 ||||| | | | | ||| | ||| | | ||||| || || | | || ||| Sbjct 48922 TGGGGCGAGATGGTGTC-GAGGAGTTCGGAGCCGACGGG--GA-CGCCCATGGCGGTGAG 48867 Query 1726912 ATCGC---GCAACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTC 1726968 |||| | | | ||||| |||| ||| |||||| | | | |||| | || ||||| Sbjct 48866 GTCGCAGAGGAGCTGGCGG-GCGAGGCC--CAGGCCCTTGTTGATGCGGAAGGAGCCGTC 48810 Query 1726969 GAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTT 1727019 || ||| |||||| || ||||||||||| ||||| ||||| ||||| || Sbjct 48809 GATGTCCGGGTCGTTGATGAGGCCCTTCCAGCCGACCGTCGTCCGCGGTTT 48759 >seq98 Length=58422 Score = 105 bits (116), Expect = 8e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 |||||||| ||||||| |||| ||||||||||| |||||||| | || | ||||| | Sbjct 28546 GCCTCGGTCGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGGCCATCGCC 28605 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||||| || ||| |||||||||||||||||||| Sbjct 28606 TTGTTGGAGATACCGGTGTCAGGGTGCACCTGCTTGAGCAC 28646 >seq865 Length=134895 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1627864 AACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGG 1627923 ||| | || || | ||| |||||||| || || || || |||||||||| ||| || | Sbjct 113632 AACGCATCCGCCAAGCCTTGCACGCCCACACCGATGGGACGGTGGCGCATGTTTGAACGT 113691 Query 1627924 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 1627974 |||||||||| | ||||||||||||| |||||| | ||||||||||||| Sbjct 113692 TGGGCCTCGGGAATGGGGTAGTGGTTGACGTCGATGATGCGGTTGAGGTTG 113742 >seq1328 Length=41146 Score = 95.1 bits (104), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 |||||||| || || || ||||| ||| ||| || || || ||||||||||| | Sbjct 15376 ATCGGCGGGACCGTCACCTGCGTCATCCGCGGCGTCCCCGCGGGGCTCGGCGAGCCCGTC 15317 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| ||||||| ||||| ||||| ||||| || ||||| ||||| |||| Sbjct 15316 TTCGACAAGCTCGAGGCGAAGCTCGGGCACGCGATGCTCTCCATCCCCGCCACGAAGGCG 15257 Query 19173 TTCGAGATTGGCAGCGGGTT 19192 |||||||| ||| ||| || Sbjct 15256 TTCGAGATCGGCTCCGGCTT 15237 >seq1342 Length=108619 Score = 93.3 bits (102), Expect = 5e-13 Identities = 243/360 (68%), Gaps = 13/360 (4%) Strand=Plus/Plus Query 1726685 TGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCG 1726744 ||||| ||| ||||| || ||||||| || | | || | |||||||| | Sbjct 48410 TGCGGTTGGCTAGCGGCACGGCATGCGTCGATAGCGATACCGACCGTACCGTCGGTCGAG 48469 Query 1726745 TTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCG 1726804 ||||||||||| ||| || | || ||||| | || ||| |||||||||||| |||| Sbjct 48470 TTCTTGAAGCCCGTGGGCATGGACAACGCCGAGGTCAGCTCACGGTGCACCTGGGACTCG 48529 Query 1726805 GTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA-AGGGGCCACCAG 1726863 || ||||| ||||| | || ||||||| ||| ||||| ||| || | ||| | | Sbjct 48530 GTAGTGCGGGCGCCGATAGCACCCCACGACACGAGGTCCGCCGTGTACTGCGGCGAAATG 48589 Query 1726864 AGGACTGAGAAACTCG--ACGGCCACG--GGCTGATCGACGGCGACGACGAGATCGCGCA 1726919 | | || |||||| || | | | ||| ||| | || | | |||| | ||| Sbjct 48590 GTGTC-CAGGAACTCGCAACCGGCGGGAAGGCCCATCTTC-GCAATGTCGAG---GAGCA 48644 Query 1726920 ACAGGCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGT 1726979 | || |||||| | || ||||| | | | || | |||| | ||||||| Sbjct 48645 GCGTGC-GCGCGA-GACG-GAGGCCCTTGTTGATTTGGAAGCTGCCGTTCATTTCGGGGT 48701 Query 1726980 CGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGA 1727039 || || ||||||||||| |||||||| ||||||||||| |||| ||| | ||||||| Sbjct 48702 CGTTGATGAGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAAATAAACACGCATGA 48761 >seq624 Length=157630 Score = 87.8 bits (96), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| || |||||||| || ||||| | || | ||||| ||||||||||| Sbjct 20852 CGATGCGCTCGAAGATATCGTTGACGAAGGAGTTGAGGATAGCCATCGCCTTGTTGGAGA 20793 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 | ||| ||||||||| ||||||||||| || Sbjct 20792 TACCCGTGTCGGGGTGGACCTGCTTGAGGAC 20762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106997146033727