Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq573 141 8e-29 seq1277 86.0 5e-12 >seq573 Length=79915 Score = 141 bits (156), Expect = 8e-29 Identities = 185/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 || ||||||||||| | || || |||| ||| ||||| |||||| || || ||| Sbjct 30883 TCCGTCTCCGGGTTCTTGCACGCCTTGCACAGCACGAACTTTTCGATGAAGCCGTCGAGC 30824 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 || || | | ||| | | |||||| | ||||||||||||| | || ||||| || | Sbjct 30823 AGCTCGCGGAGCTTGGCAGCGTCGTGAGCGCCGTTGACGATGTAGCGGTCGTTCTTCTCG 30764 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 |||| || || ||||| |||||||| |||||| |||| |||||||| ||| ||| Sbjct 30763 TCGAGAACTGTCTGTGCGCCAAGCTCGCAACCGAAGAACTTGGTCGGGTACGTGGGCGGG 30704 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 || | || || ||| | |||| |||||| |||||| |||||||| ||||| ||| Sbjct 30703 CGGCTGAGGGCGCGGGCCACGTCGGACATGTTCGGGATGACGGTCTTGATACCGTTACCC 30644 Query 34558 TTTCCTTCGACCTTGG 34573 || || |||| |||| Sbjct 30643 TTGCCCTCGATTTTGG 30628 >seq1277 Length=70460 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || || |||||||| ||||||||| |||| ||| || | Sbjct 15795 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCC 15736 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || |||||| ||||| || ||| | || || || Sbjct 15735 GATACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 15676 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || || ||||| ||||||| ||| || || |||| |||||| Sbjct 15675 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAAC 15616 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || || ||||| Sbjct 15615 ATTCAGAAGGAGTCTAC 15599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832890461383