Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1277 113 9e-20 seq561 93.3 8e-14 >seq1277 Length=70460 Score = 113 bits (124), Expect = 9e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | ||| ||||| || || ||||| || || ||||| || Sbjct 15289 CCGCCGCGCAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAC 15348 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||| || | || || || || ||||| | | || || ||||| || Sbjct 15349 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 15408 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || || || || ||||| || || || || Sbjct 15409 ATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACC 15468 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || ||||||||||| || || |||||||| Sbjct 15469 TCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || ||||| || || || || || || | | ||||| || | || Sbjct 15084 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTG 15143 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || | || || || ||||| || || |||||||| |||||||| Sbjct 15144 CTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTT 15203 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || || ||||| || | || || |||| || |||||||| || || Sbjct 15204 CGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGT 15263 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | |||||| || || |||||||| Sbjct 15264 GAGCGTCTTGACGAAGATCTGCAT 15287 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||| || || || || ||||| || || || || || || | | || Sbjct 15809 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCA 15868 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | ||| |||||||| || || || ||||| Sbjct 15869 TCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTG 15928 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || || || | || || || | || ||| Sbjct 15929 TCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATC 15988 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 15989 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16023 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || ||||| || ||||| || || || || || | | || || || || || || Sbjct 15592 GTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTG 15651 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||| ||||| | | || || || || || || || ||||| || || ||||| Sbjct 15652 CTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 15711 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || || || ||||| || || || || | || || |||||||| || Sbjct 15712 CGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGT 15771 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || || |||||||| Sbjct 15772 CAACGTCTTCACGAAGATCTGCAT 15795 >seq561 Length=237278 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || || ||||| || || || || || || | | || Sbjct 97589 ACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCC 97648 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | || || || || ||||| || | || || || || || || || ||||| Sbjct 97649 GTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTT 97708 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || ||||| || | || || |||| || || Sbjct 97709 GTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGAT 97768 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||| |||||| || || |||||||| Sbjct 97769 CGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 97804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981805424606809