Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1277 105 4e-18 seq561 104 2e-17 >seq1277 Length=70460 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| ||| || || ||||||||||| || || |||||| |||| ||||| || Sbjct 15313 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTGC 15372 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || ||||| |||||||| ||| | || | ||| || ||||| || ||| Sbjct 15373 TTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 15432 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | |||||| || || || || | || || || || || || Sbjct 15433 -GCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGT 15491 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 ||||| || || |||||||||||| Sbjct 15492 CAACGTCTTGACGAAGATCTGCATA 15516 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||||||| ||||| |||| ||||| || || || ||||| Sbjct 15096 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCAAA 15155 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | || || || || ||| ||| |||| | | Sbjct 15156 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTTCA-CGT 15214 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| || ||||| || | ||||||||| || || || | ||| || | Sbjct 15215 TGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTGA 15274 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 15275 CGAAGATCTGCAT 15287 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || ||||| ||||| | || || | || Sbjct 15821 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCCTCAAGCTGC 15880 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | ||| ||||||||| | || | || || ||||| || ||| Sbjct 15881 TTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTC 15940 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| | |||||| || || || || | |||||||| || || || Sbjct 15941 GCCTTCA-CATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGT 15999 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 16000 GAGGGTCTTGACGAAGATCTGCAT 16023 >seq561 Length=237278 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || |||||||| || || |||||||| || ||||| ||||| |||| ||||| || Sbjct 97602 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAACTGC 97661 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || |||| |||||||| || |||| | || || ||||| || ||| Sbjct 97662 TTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTC 97721 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| | | ||| | ||||| || || || || | ||||||||| || || || Sbjct 97722 GCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTGCCCGT 97780 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || ||||||||||| Sbjct 97781 CAGCGTCTTGACGAAGATCTGCAT 97804 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || || || ||||| |||| || | || || || || || Sbjct 97841 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 97900 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||||| | || | ||| || ||||| ||| ||| | | || | Sbjct 97901 GATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTC-GCCTTGACGT 97959 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| || || || || | |||||||| ||||| || | || || | Sbjct 97960 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGA 98019 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 98020 CGAAGATCTGCATA 98033 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| ||||| | ||||| | || || | || ||||| || || Sbjct 98122 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 98181 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | || || ||||| || ||| || | ||| Sbjct 98182 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGA-CAT 98240 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| || || || |||| ||||| || || || || || || || | Sbjct 98241 TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 98300 Query 33737 CAAAGATCTGCATA 33750 |||||||||||||| Sbjct 98301 CAAAGATCTGCATA 98314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697065475520