Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1277 102 2e-16 seq561 84.2 5e-11 >seq1277 Length=70460 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || || || || | || || || ||| ||| Sbjct 15512 CAGATCTTCGTCAAGACGTTGACGGGGAAGACCATTACCCTCGAGGTCGAGTCTTCCGAC 15453 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || || || ||| || ||| || Sbjct 15452 ACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAG 15393 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| ||||||||||| || ||| | ||| || | ||||||||| || Sbjct 15392 CGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCGGATTACAACATC 15333 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||||||||| || Sbjct 15332 CAGAAGGAGTCCACTCTTCACCTCGT 15307 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||| || || |||||||| |||| ||||| || ||| Sbjct 15284 CAGATCTTCGTCAAGACGCTCACCGGGAAGACGATCACGCTGGAGGTGGAGTCCTCCGAC 15225 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || || ||| || Sbjct 15224 ACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAG 15165 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||| || || | || | |||| |||||| || Sbjct 15164 CGTCTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAACATC 15105 Query 206353 CAGAAAGAGTCTACTCTTCACCT 206375 ||||| ||||| || || ||||| Sbjct 15104 CAGAAGGAGTCGACGCTCCACCT 15082 >seq561 Length=237278 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || |||||||| |||| || || || ||| Sbjct 97801 CAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTTGAGTCCTCGGAC 97742 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || ||| ||| || Sbjct 97741 ACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAG 97682 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||||||||| || || | || | | || |||||| || Sbjct 97681 CGCCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACGCTCTCGGACTACAACATC 97622 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| || || |||||||| Sbjct 97621 CAGAAGGAGAGCACGCTCCACCTTGT 97596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181794589061251