Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq590 134 2e-26 >seq590 Length=36723 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 147232 AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAG 147291 |||||||| ||||||| |||| ||| | | |||||||| | ||| ||| |||||| Sbjct 25519 AGCTGGTCAACGCCCTTGCCCGTGTATTCCGCGTCGCAGTCCTCATACGAGGCGCCAAAG 25578 Query 147292 TGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCC 147351 |||| ||||||||||||||| || ||||| |||||||| | | ||| | || || Sbjct 25579 TGCCGCCACTGGAAGCCGTAGACGGGCCCGAGGTCGCCCGCGCGCCGGTG-GCCCAGGCC 25637 Query 147352 GC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGA 147410 || | || ||| ||||| ||| |||| |||||||||| | ||||||||||| Sbjct 25638 GCGCTTCTCGAGGAACTCCTTGGAGCCGTTACCGTCCCAGATCTTGATGCCCTTGGCGGA 25697 Query 147411 GAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458 ||||| | | ||||| ||| |||| | | ||||||||| | |||||| Sbjct 25698 GAGCTGCGTGGAGTCGGTGCAGCCTTGAACGAACCAGAGTAACTCCTC 25745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583475374778400