Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1532 262 6e-64 seq827 107 3e-17 seq1342 89.7 7e-12 seq98 86.0 9e-11 >seq1532 Length=168184 Score = 262 bits (290), Expect = 6e-64 Identities = 394/550 (72%), Gaps = 15/550 (3%) Strand=Plus/Plus Query 1455769 CCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGG 1455828 || || ||| ||| | |||||| || ||||| ||||| |||||||||||||| |||||| Sbjct 154931 CCCGCAGATTTGGCAGATGTAC-AAGAAGGCTGAGGCGTCCTTTTGGACCGCGGAGGAGA 154989 Query 1455829 TCGACCTCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATT 1455885 | || ||| | |||| | | ||||| || || | | | ||||||||||| | Sbjct 154990 TGGATCTCTCCAAGGACATGCACGACTGGAACAACCGTCTCACCAATGACGAGCGCCACT 155049 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 || || |||||| ||||| || || ||||||| || |||||||| |||||| || Sbjct 155050 TCGTCTCGCACGTTCTCGCGTTCTT-CGCCGCCTCGGACGGCATCGTCAACGAGAATCTC 155108 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || || || || ||||||||| | ||||| || | || || || |||||| Sbjct 155109 GTCGAGCGGTTCTCCAACGAGGTCCAAGCTGCTGAGGCTCGCTGCTTCTATGGCTTCCAG 155168 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| || |||||||||||||| |||||||||||| ||||| Sbjct 155169 ATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCAAG 155228 Query 1456066 GACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 ||||| ||| || | ||| || || ||||| || | || | | | ||| Sbjct 155229 GACCCCCAGGAGCGCGAACGCCTGTTCGATGCTATCGATACCATTCCTTGCATCAAGAAG 155288 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| || ||||| | |||||||| || | || | |||| Sbjct 155289 AAGGCCGACTGGGCCCTGCGCTGGATCTCCGACAAGGAG----TCTGC-GTTCTCTGAGC 155343 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | ||| | | ||| ||||| |||||||||||||| ||||| ||| |||| | |||||| Sbjct 155344 GTCTCATTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCT 155403 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGT 1456301 | |||||||||||||| ||| | ||||| || | || ||| |||||| | ||| | Sbjct 155404 TCTGGCTCAAGAAGCGTGGCTTGATGCCTGGGC-TCACCTTCTCCAACGAGCTGATCTCT 155462 Query 1456302 CGCGACGAAG 1456311 |||||||||| Sbjct 155463 CGCGACGAAG 155472 Score = 233 bits (258), Expect = 3e-55 Identities = 383/542 (71%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || | ||| | || || || ||||| | ||||||| | ||| Sbjct 153582 GATATGGCAGATGTAC-AAGACCGCCCAAGCGTCGTTCTGGACGGTCGAGGAGATTAACC 153524 Query 1455835 TCGGCGCCGA---CACGGTCCACTGG-GTGTC--GCTGAGCGACGACGAGCGCCATTTCA 1455888 || ||| || || ||||| | | | ||||| ||| ||||||| || |||| Sbjct 153523 TCTCATACGATCTCATGG---ACTGGAGCGACAAGCTGAACGATAACGAGCGACACTTCA 153467 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || |||| |||||||| || |||||| || ||||| || |||||| || | | Sbjct 153466 TCTCCTACGTGCTCGCCTTCTT-CGCCGCTTCAGACGGCATAGTCAACGAGAATCTCGTC 153408 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || || ||||| || | ||||| || | || ||||| ||||| ||| Sbjct 153407 GAGCGGTTCTCCAACGAGGTGCAGGCCGCGGAGGCCCGCTGCTTCTACGGCTTCCAAATC 153348 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || |||||| | ||||| || || ||||||||||| |||||||||||| || ||| Sbjct 153347 ATGATGGAAAACGTACACTCCGAGACATACTCGCTCCTCATCGACACCTACATCCGCGAC 153288 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || | || | | ||||||| ||| |||||||| | |||| | | ||| ||| Sbjct 153287 CCCGCAGAACGCGCCTACCTCTTCGACGCGATCGACACCATTCCGTGCATCAAGAAGAAG 153228 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 || ||||||||| || |||||| | ||| || || ||| ||||||||||||| Sbjct 153227 GCAGACTGGGCGTTGCGCTGGATCGCAGACGAGCGCTCCG--TCTTCGCCGAGCGGCTCG 153170 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 ||| || |||| ||||||||||||||| ||||| ||| ||| ||||||||| |||| Sbjct 153169 TCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGC 153110 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGAC 1456307 ||||||||||||| |||||| |||| ||| || ||||| | ||||| |||||| Sbjct 153109 TCAAGAAGCGCGGACTCATG-CCGGGCTTGACGTTCTCGAACGAGCTCATCAGCCGCGAC 153051 Query 1456308 GA 1456309 || Sbjct 153050 GA 153049 Score = 158 bits (174), Expect = 2e-32 Identities = 164/210 (78%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 ||| | ||||| || | || ||||||||||||||| ||| |||||||||||||| || Sbjct 152877 GAGGCTCTGCCTGTCTCTCTGATCGGCATGAACGCCGA-GCTGATGTGCCAGTACATCGA 152819 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 || ||||| ||||| ||||||| ||||||||| ||| ||||||||||||| || | Sbjct 152818 GTTC-GTCGCAGACCGGCTGCTCGTCGCGCTCGGCAGCG-AGAAGCACTACCGCGCGACG 152761 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||||||| | ||||| ||||||||||| |||||||| ||||| |||||| Sbjct 152760 AACCCGTTCGACTTCATGGACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAAG 152701 Query 1456745 CGCGTG-GCGAGTACGCCAAGGCCGGCGTC 1456773 |||||| ||||||| ||| ||| ||| || Sbjct 152700 CGCGTGTCCGAGTACTCCATGGCGGGCTTC 152671 Score = 122 bits (134), Expect = 1e-21 Identities = 149/196 (76%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 ||||||||||||||||||||||| ||||||| |||||||||| || || || || |||| Sbjct 155655 GCGCTCATCGGCATGAACGCCAC-GCTCATGCGCCAGTACATCGAGTTC-GTTGCTGACC 155712 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC--AACCCGTTCCCAT 1456697 | || || | ||||||||| | | ||||| |||| ||| | ||||| ||| | Sbjct 155713 GTCTACTGGTTGCGCTCGGCGGAG-AGAAGTTCTACA--ACGTCACGAACCCTTTCGACT 155769 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG-GCGAGT 1456756 ||||| ||||||||||| ||||||| || ||||| |||||| |||||| ||| | Sbjct 155770 TCATGGACATGATCTCGCTCCAGGGCAAAACGAACTTCTTCGAGAAGCGCGTGTCCGACT 155829 Query 1456757 ACGCCAAGGCCGGCGT 1456772 || | ||||| || || Sbjct 155830 ACTCGAAGGCGGGTGT 155845 >seq827 Length=87468 Score = 107 bits (118), Expect = 3e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || ||||| || ||||||||||| |||| |||||||| |||||||||||| | || ||| Sbjct 48930 GCCGACCTCATCTCGTGGGGCGCCATCGGCGCGCGCACGACCGAGAGCCAGCTCCATCGC 48989 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGC 165863 ||| | ||||||| || || | |||||||| ||||| ||| |||| |||||| Sbjct 48990 GAGCTTGCGTCGGGCGTGTCGTTCCCCATTGGGTTCAAGAACGGCACGGACGGC 49043 >seq1342 Length=108619 Score = 89.7 bits (98), Expect = 7e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 165749 GGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCG 165808 ||| ||||| || ||||||| || |||| || ||||| |||||| |||||||||||| Sbjct 48571 GGCGGACCTCGTGTCGTGGGGTGCTATCGGCGCCCGCACTACCGAGTCCCAGGTGCACCG 48512 Query 165809 CGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGG 165862 ||| || | |||||| || | |||||| |||||||| ||| |||||||| Sbjct 48511 TGAGCTGACCTCGGCGTTGTCCATGCCCACGGGCTTCAAGAACTCGACCGACGG 48458 >seq98 Length=58422 Score = 86.0 bits (94), Expect = 9e-11 Identities = 84/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 |||||||||||||||||||| |||| | ||| ||||||||| | ||| | ||| Sbjct 28646 GTGCTCAAGCAGGTGCACCCTGACACCGGT-----ATC-TCCAACAAGGCGATGGCCATC 28593 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 | |||||||| ||||||||||| |||| ||||||| |||||||| Sbjct 28592 CTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGACCGAGGC 28546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177644241868422