Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq561 125 6e-24 seq1277 116 3e-21 >seq561 Length=237278 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| |||||| || | || || |||||||| || || || Sbjct 98122 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 98181 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| |||| || |||||||||| |||||| ||| | | | Sbjct 98182 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 98241 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| || ||||| | ||||| || || || ||||| || || || Sbjct 98242 GTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 98301 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 98302 AAAGATCTGCAT 98313 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 ||| |||||||| || |||||||| || | | || || |||| |||| |||||| || Sbjct 97607 CGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAACTGCTTGCC 97666 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 || || |||| ||||||||||| | || | | |||||||||| |||||| ||| Sbjct 97667 GGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTT 97726 Query 35659 CAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAG 35717 || |||| | | |||||| || || ||||||| ||||||||| || ||||||| | Sbjct 97727 CA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTGCCCGTCAGCG 97785 Query 35718 TTTTCACAAATATCTGCAT 35736 | || || || |||||||| Sbjct 97786 TCTTGACGAAGATCTGCAT 97804 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 ||| |||||||| || ||||||||||| | | || || |||| |||||| |||| Sbjct 95776 CGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCCAGCGGCTTGTT 95835 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGA-AGGAACGCTCTCCTTGTCCATGATCTTTTGCT 35657 || || || | ||||| ||||| || ||| ||| |||||||||| |||||| || Sbjct 95836 GGCGAAGATGAGACGCTGTTGGTCGGACGGGATCGC-CTCCTTGTCCTGGATCTTCGCCT 95894 Query 35658 TCAGAGTTGCC-ACCGTGT-CGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 ||| | |||| | ||||| || | | || ||||||| | |||||| | |||| | | Sbjct 95895 TCA-CGCTGCCGATCGTGTCCGATGGCTT-GACCTCCAAGGGGATCGTCTGACCCATGAG 95952 Query 35716 AGTTTTCACAAATATCTGCATTCTGT 35741 || || || ||||| ||||| |||| Sbjct 95953 GGTCTTGACGAATATTTGCATGCTGT 95978 >seq1277 Length=70460 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || |||| |||| |||||| || ||||| Sbjct 15096 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCAAA 15155 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||| ||| ||||| ||||| || Sbjct 15156 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTTCA-CGT 15214 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||||| || |||||||||| ||||||||| || || || | || || | Sbjct 15215 TGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTGA 15274 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 15275 CGAAGATCTGCAT 15287 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | || || || |||| |||| |||||| || || || Sbjct 15324 CTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAA 15383 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| | ||||||||| |||||| ||| | || Sbjct 15384 GATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTGA-CGT 15442 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||||| || || ||||| | || || || || |||||||| || || | Sbjct 15443 TGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGA 15502 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 15503 CGAAGATCTGCAT 15515 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | ||| || | | || || |||||||| || || || Sbjct 15604 CTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAA 15663 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | || |||||||||| |||||| ||||| || Sbjct 15664 GATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 15722 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || || ||||| | || || || || || ||||| || |||| Sbjct 15723 TGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCA 15782 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 15783 CGAAGATCTGCAT 15795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783845953480