Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1532 95.1 2e-14 >seq1532 Length=168184 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| |||||||| || | ||| || || | | || | ||||| || || ||| Sbjct 155497 AAGCACGCGAAGTCCGTGTGCATGCCTTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTG 155438 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 || |||||||| | |||||||| |||||||| || |||| || ||||| || || ||| Sbjct 155437 AGCCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAG 155378 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-- 39791 |||||||| || || || || || |||| || | ||| | | | || || | Sbjct 155377 AAGATGCCCTCGACAGCGGCGAAGGCAATGAGACGCTCAGAGAACGCAGACTCCTTGTCG 155318 Query 39792 -GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| | | ||||| || || |||||||| | ||||| || || || |||||| Sbjct 155317 GAGATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTATCGATAGCA 155258 Query 39851 T 39851 | Sbjct 155257 T 155257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893937010840