Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1532 89.7 2e-12 seq865 87.8 6e-12 >seq1532 Length=168184 Score = 89.7 bits (98), Expect = 2e-12 Identities = 122/169 (72%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| |||||| || ||||| || || | ||||| || | || || |||| ||| Sbjct 153186 CTTCGCCGAGCGGCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 153127 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 ||| ||||||||||| | || ||||| ||||| |||| || |||| || |||| Sbjct 153126 C-GCCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCTTGACGTTCTCGAACG 153068 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 | || ||||| || |||||||| |||| |||||| || ||||| || Sbjct 153067 AGCTCATCAGCCGCGACGAGGGCATGCACACCGACTTTGCGTGTCTCCT 153019 >seq865 Length=134895 Score = 87.8 bits (96), Expect = 6e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 255007 GGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGA 255066 |||||| ||||||||||| ||||| ||| ||||| ||||| ||| |||||||||| || Sbjct 114420 GGCTCGTTACGTCGATCAGGGGGGTAACAAGCGCCCCGGAGCATTCGCCATCTACCTTGA 114361 Query 255067 GCCGTGGCACGCCGAC 255082 ||| |||||||||||| Sbjct 114360 GCCCTGGCACGCCGAC 114345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588300773189295