Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1532 123 3e-23 seq1328 87.8 2e-12 >seq1532 Length=168184 Score = 123 bits (136), Expect = 3e-23 Identities = 175/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||||| ||| |||||| || |||||||| || || Sbjct 153028 GCAAAGTCGGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTCGAGAACGTCAAGCCC 153087 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| || || || ||||| ||||||||||| Sbjct 153088 GGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATG 153147 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGAGCGGGACTTTGTATCA 130192 ||||| || |||||||| | ||| ||||| || || |||||| | || | Sbjct 153148 CCCTCGACGGCGGCGAACGCGACGAGCCGCTCGGCGAAGACGGAGCGCTCGTCTG---CG 153204 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | ||| || |||||| | ||||| |||| ||| ||||| | ||| | |||||| || Sbjct 153205 ATCCAGCGCAACGCCCAGTCTGCCTTCTTCTTGATGCACGGAATGGTGTCGATCGCGTCG 153264 Query 130253 AAGAG 130257 ||||| Sbjct 153265 AAGAG 153269 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 || || ||| ||| | || ||||| || ||||| || || || |||||| || || Sbjct 155491 GCGAAGTCCGTGTGCATGCCTTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTGAGCCCA 155432 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | || |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 155431 GGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATG 155372 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAG 130169 ||||| ||| ||||| |||| ||||||||||| Sbjct 155371 CCCTCGACAGCGGCGAAGGCAATGAGACGCTCAG 155338 >seq1328 Length=41146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 179955 CTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAAC 180014 ||| |||||||| ||||| |||||| ||| || |||||||| ||| ||| ||||||| Sbjct 28658 CTTTCCACGGAGCGGGAAGACACCGAAGTTGTCGCGACCAACGACACCGAGGCCAGCAAT 28717 Query 180015 TGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGC 180074 || | | | | || || |||||||| || | ||| || ||||| | ||||| | ||| Sbjct 28718 AGCCAACGCCCTGGCAGAGTCACCCTCAGTGAGGATAAGGGTACAATCTCCAGCTC-TGC 28776 Query 180075 C-GTCCCTGCCTTGTTCGCGTC 180095 || || || ||||||||||| Sbjct 28777 GTGTGCCCGCATTGTTCGCGTC 28798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618421818608360