Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1532 107 2e-18 seq1328 91.5 2e-13 >seq1532 Length=168184 Score = 107 bits (118), Expect = 2e-18 Identities = 172/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| || || ||| | || ||||||| || | ||||| || || ||||| || Sbjct 153269 CTCTTCGACGCGATCGACACCATTCCGTGCATCAAGAAGAAGGCAGACTGGGCGTTGCGC 153210 Query 94774 TGGTTTGATACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| | | || | ||| ||| || || ||||| ||| |||| || || || Sbjct 153209 TGGATCG---CAGACGAGCGCTCCGTCTTCGCCGAGCGGCTCGTCGCGTTCGCCGCCGTC 153153 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 94890 ||||| ||||||||||| || |||||| ||| || | |||||||||||||| || ||| Sbjct 153152 GAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGACTC 153093 Query 94891 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 94950 ||||| || | ||||| |||||||| ||| || |||||||| | ||| || Sbjct 153092 ATGCCGGGCTTGACGTTCTCGAACGAGCTCATCAGCCGCGACGAGGGCATGCACACCGAC 153033 Query 94951 TTTGCG 94956 |||||| Sbjct 153032 TTTGCG 153027 Score = 107 bits (118), Expect = 2e-18 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || || || || ||| | || |||| || || | ||||| || || ||||| || Sbjct 155250 CTGTTCGATGCTATCGATACCATTCCTTGCATCAAGAAGAAGGCCGACTGGGCCCTGCGC 155309 Query 94774 TGGTT-TGATACAA--AGTC-GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 94829 ||| | | |||| |||| |||||| ||||||| ||| | || || || ||| Sbjct 155310 TGGATCTCCGACAAGGAGTCTGCGTTCT----CTGAGCGTCTCATTGCCTTCGCCGCTGT 155365 Query 94830 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 94889 ||||| ||||||||||| || || ||| | | || | |||||||||||||| || | Sbjct 155366 CGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCTT 155425 Query 94890 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||||| || ||| ||||||||||||||| |||||||| ||||| || Sbjct 155426 GATGCCTGGGCTCACCTTCTCCAACGAGCTGATCTCTCGCGACGAAGG 155473 >seq1328 Length=41146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/293 (69%), Gaps = 10/293 (3%) Strand=Plus/Plus Query 169201 ATCCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTAC 169259 ||||||||||| ||| ||||| || || || ||||| | || ||| || |||||| Sbjct 28511 ATCCGTCATGAGCATCAGACGTCCGTAGCGCAAGCT-GTTCACGTCTGTGTACTCCTTAT 28569 Query 169260 CCTGTTGAAGACCCAAGATCTTCTTGA-GATCGTTGAACT-CTTGGTTTGATGTGAGCTG 169317 || || | |||| |||||||||| | || |||| | | | ||| ||| ||| Sbjct 28570 TGTGCTGCAAGCCCATAATCTTCTTGATGTTC--TGAATTTCCTCGTTCTTCATGATCTG 28627 Query 169318 TGTGACAGAG-GCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGT 169376 || | || ||||| || ||| ||| ||||| || |||||||||||| ||| Sbjct 28628 -GTCATGCTTCGCGTCGCGGACGTTCAGCAGCTTTCCACGGAGCGGGAAGACACCGAAGT 28686 Query 169377 GATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGG 169436 || ||||||||||| ||| || || | || | | | | || ||||||||||| | Sbjct 28687 TGTCGCGACCAACGACACCGAGGCCAGCAATAGCCAACGCCCTGGCAGAGTCACCCTCAG 28746 Query 169437 TGACGATGAGCGTACATTTTCCAGAT-TGTGCCGTACCCGCCTTGTTCGCATC 169488 ||| ||| || ||||| | ||||| | || | || ||||| |||||||| || Sbjct 28747 TGAGGATAAGGGTACAATCTCCAGCTCTGCG-TGTGCCCGCATTGTTCGCGTC 28798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248179694440