Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1277 129 2e-24 seq145 84.2 7e-11 >seq1277 Length=70460 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || ||||| || || || ||||| || || || || || || Sbjct 15793 CATACCGCCACGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 15852 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || |||||||| ||||| || || || || ||||| |||||||||||||| || Sbjct 15853 CGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGG 15912 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || ||||| || || | || || | || Sbjct 15913 GGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTC 15972 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || || || || || || |||||||| Sbjct 15973 AACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16023 Score = 111 bits (122), Expect = 5e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 || || || || ||||| || || || || || || || | || || || || || | Sbjct 15082 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAAC 15141 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || ||||||||||| ||||| ||||| || ||||| || || || ||||||||||| Sbjct 15142 TGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATC 15201 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || || || || || |||| || || | || || || || || | ||||| ||| Sbjct 15202 TTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCG 15261 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || |||||||| Sbjct 15262 GTGAGCGTCTTGACGAAGATCTGCAT 15287 >seq145 Length=93702 Score = 84.2 bits (92), Expect = 7e-11 Identities = 131/186 (70%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 349232 TGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGA 349291 || || | ||| ||||||||||||||||| || || || || || || || |||||| | Sbjct 53409 TGCGTCGGTGTCTGGCAAAATGATCGTGTTGAGATCATCGCCAACGACCAGGGTAACCGC 53350 Query 349292 ACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAA 349351 || || || || ||||| || || ||||| || ||| | |||| ||||| || || || Sbjct 53349 ACCACACCCTCCTACGTCGCCTTCACCGACACCGAGAGGTTGATCGGTGACTCCGCGAAG 53290 Query 349352 AATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAG- 349410 || || | || || || | || || || || || || ||||| || || || | Sbjct 53289 AACCAGGTCGCGATGAACCCCCACAACACCGTCTTCGACGCGAAGCGTCTCATCGGCCGC 53230 Query 349411 AAGTTT 349416 |||||| Sbjct 53229 AAGTTT 53224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515220794024993