Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1532 132 5e-26 seq865 118 1e-21 seq1328 89.7 6e-13 seq571 87.8 2e-12 >seq1532 Length=168184 Score = 132 bits (146), Expect = 5e-26 Identities = 339/513 (66%), Gaps = 10/513 (2%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | || |||||||| | ||||||||||| | ||| |||||| Sbjct 155458 ATCAGCTCGTTGGAGAAGGTGAGCCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATG 155399 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||| || || |||||||||||| |||||| || ||||| | || || | Sbjct 155398 GAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACAGCGGCGAAGGCAATGAGACGCTCA 155339 Query 74904 GCGAACGGTGCATC---GGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 | ||||| | || | | ||||| | | ||||| || || || |||| Sbjct 155338 GAGAACGCAGACTCCTTGTCGGAGATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATG 155279 Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGC 75020 ||| | |||||||| || | ||| |||| | | ||| | ||| ||||||| | Sbjct 155278 CAAGGAATGGTATCGATAGCATCGAACAGGCGTTCGCGCTCCTGGGGGTCCTTGATGTAG 155219 Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCG 75080 |||| || | || ||||| ||||| || || || ||| | | |||| | | Sbjct 155218 GTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCA 155159 Query 75081 TAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCC 75140 ||||| | || ||||| ||| || || || || || || | | ||| |||||| Sbjct 155158 TAGAAGCAGCGAGCCTCAGCAGCTTGGACCTCGTTGGAGAACCGCTCGACGAGATTCTCG 155099 Query 75141 ATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCA 75200 ||||||||||||||||||||||||| || || || || || ||||||||||| Sbjct 155098 TTGACGATGCCGTCCGAGGCGGCGAAGAACGCGAGAACGTGCGAGACGAAGTGGCGCTCG 155039 Query 75201 TCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 || | |||| | |||| ||| || | || |||| | | ||| |||||||| | Sbjct 155038 TCATTGGTGAGACGGTTGTTCCAGTCGTGCATGTCCTTGGAGAGATCCATCTCCTCCGCG 154979 Query 75258 GTCCAGAA--ACTCCCAATCGCCTTTTTGTACA 75288 ||||| || || || | ||||| ||||||| Sbjct 154978 GTCCAAAAGGACGCCTCA--GCCTTCTTGTACA 154948 Score = 120 bits (132), Expect = 3e-22 Identities = 333/505 (66%), Gaps = 8/505 (2%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| || | || ||||| |||| | ||| ||||| ||||| ||||| Sbjct 153045 GCCCTCGTCGCGGCTGATGAGCTCGTTCGAGAACGTCAAGCCCGGCATGAGTCCGCGCTT 153104 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| |||||||| |||||| || |||||||||||| ||||| || || Sbjct 153105 CTTGAGCCAGAAGATGGCGGCGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCGAA 153164 Query 74888 GGCGACAAGGCGTTGCGCGA--ACGGTGC-ATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 ||||| || || | |||| |||| || ||| | ||||| | ||||| || Sbjct 153165 CGCGACGAGCCGCTCGGCGAAGACGGAGCGCTCGTCTGCGATCCAGCGCAACGCCCAGTC 153224 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 || || |||| ||| || | || |||||||| | ||||||| || ||| Sbjct 153225 TGCCTTCTTCTTGA-TGCACGGAATGGTGTCGATCGCGTCGAAGAGGTAGGCGCGTTCTG 153283 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 |||| || || | |||| || | || ||||| ||||| || || | || Sbjct 153284 CGGGGTCGCGGATGTAGGTGTCGATGAGGAGCGAGTATGTCTCGGAGTGTACGTTTTCCA 153343 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | ||| | ||||||| | || ||||| || ||| || || || || || Sbjct 153344 TCATGATTTGGAAGCCGTAGAAGCAGCGGGCCTCCGCGGCCTGCACCTCGTTGGAGAACC 153403 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | ||| |||||| |||| |||||||| || |||||||| || || || || Sbjct 153404 GCTCGACGAGATTCTCGTTGACTATGCCGTCTGAAGCGGCGAAGAAGGCGAGCACGTAGG 153463 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTC---CCAATCCTTCAGGTCCCCCGCCA 75240 ||| ||||| ||||| | || | || ||||| ||| ||| | || || | | Sbjct 153464 AGATGAAGTGTCGCTCGTTATCGTTCAGCTTGTCGCTCCAGTCCATGAGATCGTATGAGA 153523 Query 75241 AATCAATCTCCTCGACCGTCCAGAA 75265 | ||||||||||||||||||||| Sbjct 153524 GGTTAATCTCCTCGACCGTCCAGAA 153548 >seq865 Length=134895 Score = 118 bits (130), Expect = 1e-21 Identities = 186/265 (70%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 53173 TGAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACAC 53232 |||| ||| ||| |||| ||||||| || || | || || ||||| | ||| | Sbjct 114826 TGAGCGGCCACAGCATCTGATCATGCGAGTGGCTGTCGGCATACACGGCGCCGATATCGA 114767 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 |||| | ||||| ||| || | ||| | |||||| || || || ||||||| Sbjct 114766 CCGTGCCATCGAGACCTACCACCTCATGTCTGAGCGGTACTTCACCCATGCTTCGCCAAC 114707 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGAT 53349 |||||||||||||||| |||| ||| || |||| ||||||||||| |||| Sbjct 114706 TTTGTTCAACGCTGGTACACCCAACCCCCAGCTG---AGCTCGTGCTTCCTGGTGTCGAT 114650 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 |||||| || || ||||| ||||| ||| |||||||||||| || || ||||| || Sbjct 114649 GAAGGACGATTCCATCGAGGGCATTTACTCGACGCTCAAGGACTGCGCGAACATCAGTAA 114590 Query 53410 GTGGTCGGGTGGTATCGGTATCCAC 53434 | | ||||| || |||||| || Sbjct 114589 GACCGCTGGTGGCATTGGTATCAAC 114565 Score = 105 bits (116), Expect = 7e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 |||||||||||| | | | || ||||| |||||||| ||||| | | | ||||| Sbjct 114476 GGGACGAACGGCTACTCGAACGGGATCGTCCCTATGCTTCGCGTATACGATGCGACGGCT 114417 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || |||||| | ||||| ||| |||||| || | |||||||||||||| ||||| Sbjct 114416 CGTTACGTCGATCAGGGGGGTAACAAGCGCCCCGGAGCATTCGCCATCTACCTTGAGCCC 114357 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||||||| | | ||||| | || ||||| ||| || || | || || | Sbjct 114356 TGGCACGCCGACGTCTTCGAGTTCATTGATCTGCGCAAGAACCACGGCAAAGAGGAAGTC 114297 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTT 53694 || ||| || ||||| ||| || || ||||| || || || || Sbjct 114296 CGTGCCCGCGATCTGTTCTAC-GCGCTCTGGATACCCGATCTTTT 114253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| || ||| ||| || |||||||| | ||||||| | | ||| | | Sbjct 113089 TCAAGGCCATCTACAAGACCGTCTGGGAGATCTCGCAGAAGAAGGTTCTCGACCTCGCCG 113030 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | |||||||| || | |||| |||||| ||||| || || || | || || || Sbjct 113029 CGGATCGTGGAGCATTCATCTGCCAGTCGCAGTCGCTCAATGTCCACCTGCAGTCCCCCA 112970 Query 55848 C-ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 | || ||||| | ||| |||||||| || || ||||||||||| |||||||| || Sbjct 112969 CCACGGGCCA-GCTGACGAGCATGCACTTCTATGGCTGGAAGAAGGGCCTCAAGACCGGC 112911 Query 55907 ATGTACTATCTGCGGACCCGCGCC 55930 |||||||| || || || ||| || Sbjct 112910 ATGTACTACCTTCGCACGCGCCCC 112887 >seq1328 Length=41146 Score = 89.7 bits (98), Expect = 6e-13 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAGG----TCACGTAGTGACCCGTAGACCTT 152867 || ||||||| ||||||||| |||||||||| | |||||| || ||| |||| Sbjct 28512 TCCGTCATGAGCATCAGACGTCCGTAGCGCAAGCTGTTCACGTC-TGT---GTACTCCTT 28567 Query 152868 TCCATGTTG-AAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCT 152926 || || |||||| | ||||| |||| ||| || |||||| || | | | || Sbjct 28568 ATTGTGCTGCAAGCCC-ATAATCTTCTTGATGTTCTGAATTTCCTCGTTCTTCATGATCT 28626 Query 152927 GTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACG 152986 | | | | || || || || || || ||||||| ||||| || || || ||||| Sbjct 28627 GGTCATGCTTCGCGTCGCGGACGTTCAGCAGCTTTCCACGGAGCGGGAAGACACCGAAGT 28686 Query 152987 CGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGG 153046 || ||| || || || | || || |||||||| | || | || ||||||||||| | Sbjct 28687 TGTCGCGACCAACGACACCGAGGCCAGCAATAGCCAACGCCCTGGCAGAGTCACCCTCAG 28746 Query 153047 TGATAATAAGCGTACAGTC 153065 ||| ||||| ||||| || Sbjct 28747 TGAGGATAAGGGTACAATC 28765 >seq571 Length=51678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 124673 AATCTTGCGCGTCACAAAC-TCGGA--ACCGCGTCGCTCAGACTCGTGGTTGAACAGAAT 124729 ||| ||||| ||||| ||| || | || |||| || |||||||||||||| || || Sbjct 15248 AATTTTGCGGGTCACGAACGTCCGCCCACGGCGTGGC---GACTCGTGGTTGAAGAGGAT 15192 Query 124730 GCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAA 124789 || | |||| |||| ||||||| |||||||||||| || ||||| | || | Sbjct 15191 CCCGTTGCACGAGTACATGCCGTACGCCTCGCGGTAGTTGACAGTGATCCAGAAGCCGTA 15132 Query 124790 GAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTG 124832 |||||||| ||||| ||||| || |||||||| || ||| Sbjct 15131 GAGCTTGGCGACGCCGTAGGGAGAGCGCGGGTAGAACGGCGTG 15089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204159613800