Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1277 170 2e-37 seq561 168 8e-37 seq865 100 3e-16 seq1532 98.7 1e-15 seq318 93.3 5e-14 seq1328 82.4 9e-11 >seq1277 Length=70460 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||||||||| Sbjct 16023 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 15964 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||||||||| || || ||||| ||| Sbjct 15963 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 15904 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 15903 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTCTCGGACTACAAC 15844 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| |||| ||||| || || Sbjct 15843 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGCCTTCGTGGCGG 15797 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | ||||||||||| ||||| || ||||||||||| Sbjct 15795 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCC 15736 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 15735 GATACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 15676 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| ||||| |||||||||| | || | | ||||| || Sbjct 15675 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAAC 15616 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || ||||| || Sbjct 15615 ATTCAGAAGGAGTCTACCCTTCACCT 15590 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||| ||||| || || || ||||| ||||| Sbjct 15287 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACGATCACGCTGGAGGTGGAGTCCTCC 15228 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || |||||||| |||||||| || ||||| |||||| Sbjct 15227 GACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAG 15168 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| | ||||| | || || || | ||||| || Sbjct 15167 CAGCGTCTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAAC 15108 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || || || || Sbjct 15107 ATCCAGAAGGAGTCGACGCTCCACCT 15082 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | || || ||||| ||||| || ||||| ||||| Sbjct 15515 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACCATTACCCTCGAGGTCGAGTCTTCC 15456 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| ||||| ||||||||| Sbjct 15455 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 15396 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| | ||||| | || || || | || || || Sbjct 15395 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCGGATTACAAC 15336 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||||| || ||| | ||||| ||||| || Sbjct 15335 ATCCAGAAGGAGTCCACTCTTCACCTCGTCCTTCGTCTGCGCGGCGG 15289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || || ||||| || ||||| |||||||| | |||||| Sbjct 16146 ATCCCGCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGTACC 16087 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||| ||||| ||||| || ||||| || | ||||||||||| Sbjct 16086 CTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCATCTCGTTCTCCGTCTTCGCGGA 16027 Query 27631 GG 27632 || Sbjct 16026 GG 16025 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || ||||| ||||| ||||| Sbjct 16306 AATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCCTC 16247 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | ||| | || | ||||| || || |||||||||||||| Sbjct 16246 TGACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGG 16202 >seq561 Length=237278 Score = 168 bits (186), Expect = 8e-37 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || || |||||||| ||||| Sbjct 98313 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 98254 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 98253 GACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 98194 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| ||| ||| | | ||||| || Sbjct 98193 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAAC 98134 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || ||||| || Sbjct 98133 ATCCAGAAGGAGTCGACCCTTCACCT 98108 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || |||||||| || || || ||||||||||| Sbjct 97804 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTTGAGTCCTCG 97745 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 97744 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 97685 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| | ||||| | || || || | ||||| || Sbjct 97684 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACGCTCTCGGACTACAAC 97625 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || ||| ||||||| |||||||| Sbjct 97624 ATCCAGAAGGAGAGCACGCTCCACCTTGTCCTGCGTCTCCGCGGTGG 97578 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || || || ||||| ||||| Sbjct 98032 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATCACCCTCGAGGTCGAGTCGTCC 97973 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| || ||||| || ||| Sbjct 97972 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCAG 97913 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | || || || | ||||| || Sbjct 97912 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 97853 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| || || || Sbjct 97852 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCCGTCTGCGTGGCGG 97806 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || ||||| |||||||| | ||||||||||| || || || |||| ||| || Sbjct 93036 CAGATCTTCGTCAAGACCGTGACCGGCAAGACCATCACCCTGGAGGCCCTGTCGTCCGAC 92977 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | || | ||| ||||||| || ||||| ||||||||||| | | | ||| || ||| Sbjct 92976 ACTATCGAAAACGTGAAGGCAAAGATTCATGACAAGGAGGGCACTGCGCCAAACACCCAG 92917 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 ||||| || || ||||| ||||| ||||| |||| || || | | ||||| || || Sbjct 92916 CGTCTCATCTTCGCTGGCAAGCAGCTCGAAGATGGCCGAACTTTGTCCGACTACAACATC 92857 Query 27589 CAAAAGGAATCCACTCTTCA 27608 || ||||| || || || || Sbjct 92856 CAGAAGGAGTCGACCCTGCA 92837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||||| Sbjct 98645 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCG 98586 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| || | ||||| || || |||||||||||||| Sbjct 98585 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 98542 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || | || |||| || | | ||||| || || Sbjct 95973 ATGCAAATATTCGTCAAGACCCTCATGGGTCAGACGATCCCCTTGGAGGTCAAGCCATCG 95914 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | | ||||||| || || ||||||||||||| || || | ||||| Sbjct 95913 GACACGATCGGCAGCGTGAAGGCGAAGATCCAGGACAAGGAGGCGATCCCGTCCGACCAA 95854 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || |||| || ||||| | || || || | || || || Sbjct 95853 CAGCGTCTCATCTTCGCCAACAAGCCGCTGGAGGACGGCCGCACGCTCTCGGATTACAAC 95794 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||| || || || ||| ||| ||| |||||| || Sbjct 95793 ATCCAGAAGGAGAGCACGCTCCACCTCGTCATGCTTCTCCGCGGTTGA 95746 >seq865 Length=134895 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| || || ||||||||||| ||||||||||||||||||||||| || | |||||| Sbjct 112891 CGCGTGCGAAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCAGCCATAGAAGTGCATG 112950 Query 80095 GAACTGAGCTTCGCAAGT-GTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 | ||| | || || |||||| || || | || || || ||||| ||||| || Sbjct 112951 CTCGTCAGC-TGGCCCGTGGTGGGGGACTGCAGGTGGACATTGAGCGACTGCGACTGGCA 113009 Query 80154 GATGAAAGCCCCACGATCTGCCGC 80177 |||||| || |||||||| || || Sbjct 113010 GATGAATGCTCCACGATCCGCGGC 113033 >seq1532 Length=168184 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT----GAATCGTGGGTCGTCGTTTGGTCAGCG 64718 || ||||| || |||||| | || ||||| || | | ||| |||| | |||| Sbjct 155286 AAGAAGGCCGACTGGGCCCTGCGCTGGATCTCCGACAAG-GAGTCTGCGTTCTCTGAGCG 155344 Query 64719 TCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTT 64778 |||| || || ||| ||| || || || ||||| || || || ||| || || || Sbjct 155345 TCTCATTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTT 155404 Query 64779 CTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCG 64838 |||||| || ||||| ||| ||||||| || || | || || ||||||||||||||||| Sbjct 155405 CTGGCTCAAGAAGCGTGGCTTGATGCCTGGGCTCACCTTCTCCAACGAGCTGATCTCTCG 155464 Query 64839 GGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG 64890 ||||| || | ||| || || ||| || ||||||||||| ||| Sbjct 155465 CGACGAAGGCATGCACACGGACTTCGCGTGCTTGCTCTTCAGCCACCTGAAG 155516 >seq318 Length=85141 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||||||||| || || || || || ||||| |||||||||| || ||| Sbjct 71777 ATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACC 71718 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| ||||| || |||| ||||| || ||||| || || || ||||||| || || Sbjct 71717 CTCAGC-GACTACAACATCCAGAAGGAGTCTACTCTCCACCTGGTGCTGCGTCTGCGTGG 71659 Query 27630 TGG 27632 ||| Sbjct 71658 TGG 71656 >seq1328 Length=41146 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 31252 GAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTG 31311 || || || ||||| | || ||||||||||| || | |||| | |||||||||||| | Sbjct 28765 GATTGTACCCTTATCCTCACTGAGGGTGACTCTGCCAGGGCGTTGGCTATTGCTGGCCTC 28706 Query 31312 AGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTT 31371 |||| || || ||| | ||||| || || |||||||| || |||| || ||||| Sbjct 28705 GGTGTCGTTGGTCGCGACAACTTCGGTGTCTTCCCGCTCCGTGGAAAGCTGCTGAACGTC 28646 Query 31372 CGTGACGC 31379 || ||||| Sbjct 28645 CGCGACGC 28638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298059908720