Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq590 116 3e-21 >seq590 Length=36723 Score = 116 bits (128), Expect = 3e-21 Identities = 205/296 (69%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 29756 GGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29815 || || |||||||||||||||| | ||| ||||| | ||||| || | || || Sbjct 25004 GGGTGGGGGTCGTAACCCTCCACGATGAAGTCCTCGCTCCGGAAGTCATCGATGCCCTTG 25063 Query 29816 ACCCT-CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 29874 || | | | || | ||| |||| || || || ||||| | ||||||||| || || Sbjct 25064 ACTTTGCGCGCCCAT-CGCAGCTTGGGGAATGGCCTTGGCTCGCGCTCGAGCTGCGTTTT 25122 Query 29875 CAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCC 29934 |||| || |||| || |||||||||| |||||||| || | | || | ||| Sbjct 25123 GAGCGCGTCGACGTGGTCGCGGTAGACGTGCGCGTCTCCGAGCTGGATGATCAGCTCGTG 25182 Query 29935 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29994 ||| | |||||||||| || | ||||| ||||||||| | |||| || ||||| Sbjct 25183 CGGGACGGTATCGGTGACGTGCGCGACCATGTGCGTGAGGAGGGCGTAGGACGCAATGTT 25242 Query 29995 AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 30050 ||||| | |||||||||| ||| | || | |||||| | | || ||||||| Sbjct 25243 GAAGGGGATTCCGAGCCCCAGGTCGGCGGAGCGCTGGTACATCAAGCAGGAGAGCT 25298 Score = 107 bits (118), Expect = 2e-18 Identities = 207/303 (68%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 ||||||||| ||| | | ||||||||| | ||| |||| || | | || | | Sbjct 25449 GGGGTTCCACGCGGAGAGGATGATGCGGCGGTCGGTGGGGTCGTGCTTTATCTTGCGAAT 25508 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACT 30236 | | || ||||| || || ||| | |||| ||| || || | || |||| ||| Sbjct 25509 GCACTCCTGGAGCTGGTCAACGCCCTTGCCCGTGTATTCCGCGTCGCA-GTCCTCATACG 25567 Query 30237 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30296 || || || |||| ||||||||| ||||| || || || ||||| ||| | || || Sbjct 25568 AGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGCCCGAGGTCGCCCGCGCGCCGGT 25627 Query 30297 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30356 | | | ||| | ||| || | || || |||| ||||| ||||||||||||| | | Sbjct 25628 GGCCCAGGCCGCGCTTCTCGAGGAACTCCTTGGAGCCGTTACCGTCCCAGATCTTGATGC 25687 Query 30357 CCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30416 |||| | ||||||| |||||| ||| | ||| |||||||| || | |||||| | Sbjct 25688 CCTTGGCGGAGAGCTGCGTGGAGTCGGTGCAGCCTTGAACGAACCAGAGTAACTCCTCGA 25747 Query 30417 CGA 30419 ||| Sbjct 25748 CGA 25750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301828247252