Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq561 114 1e-20 seq1277 113 4e-20 >seq561 Length=237278 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | || || ||||| || || ||||| Sbjct 98313 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 98254 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 98253 GACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 98194 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || || || ||| | ||||| |||||| Sbjct 98193 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAAC 98134 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||||||| Sbjct 98133 ATCCAGAAGGAGTCGACC 98116 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || || || ||||| Sbjct 98032 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATCACCCTCGAGGTCGAGTCGTCC 97973 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || || || || || ||||| Sbjct 97972 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCAG 97913 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | || |||| || |||||| Sbjct 97912 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 97853 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | ||| |||| || ||||| Sbjct 97852 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCCGTCTGCGTGGCGGCAT 97803 >seq1277 Length=70460 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | ||||| || || || || | ||| Sbjct 15515 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACCATTACCCTCGAGGTCGAGTCTTCC 15456 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || |||||||| || || || || || || || Sbjct 15455 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 15396 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| || ||||| ||| | || | || ||||||||| Sbjct 15395 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCGGATTACAAC 15336 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | || | ||| |||| || ||||| Sbjct 15335 ATCCAGAAGGAGTCCACTCTTCACCTCGTCCTTCGTCTGCGCGGCGGCAT 15286 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || ||||| ||| | || || || || ||||| | Sbjct 15291 CGGCATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACGATCACGCTGGAGGTGGAGTC 15232 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| |||| || | || || || ||||| || || || ||||| || ||||| Sbjct 15231 CTCCGACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATCCCTCCCGA 15172 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | || || || || ||||| ||| | || | ||||| || Sbjct 15171 CCAGCAGCGTCTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTA 15112 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 15111 CAACATCCAGAAGGAGTCGAC 15091 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | ||||| || || || || | ||| Sbjct 15795 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCC 15736 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||| || ||||| || ||||| || Sbjct 15735 GATACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 15676 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| || | || || | ||| | || || |||||| Sbjct 15675 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAAC 15616 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| |||||||| ||| Sbjct 15615 ATTCAGAAGGAGTCTACC 15598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908989453120