Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq590 98.7 9e-16 >seq590 Length=36723 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 6850 CTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909 ||| |||||||| | |||| |||| || ||||| |||| || |||| || || Sbjct 25515 CTGGAGCTGGTCAACGCCCTTGCCCGTGTATTCCGCGTCGCAGTCCTCATACGAGGCGCC 25574 Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG-- 6967 |||||| | ||||||||| |||||||| || || | ||||||| | ||| ||| Sbjct 25575 AAAGTGCCGCCACTGGAAGCCGTAGACGGGCCCGAGGTCGCCCGCGCGCCGG--TGGCCC 25632 Query 6968 AACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGG 7027 | || ||||| || || || || || |||| | ||||||||||||| | ||| | Sbjct 25633 AGGCCGCGCTTCTCGAGGAACTCCTTGGAGCCGTTACCGTCCCAGATCTTGATGCCCTTG 25692 Query 7028 GACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACG 7087 | ||||||| | ||| || ||| || |||||||| || | ||||||||| | | Sbjct 25693 GCGGAGAGCTGCGTGGAGTCGGTGCAGCCTTGAACGAACCAGAGTAACTCCTCGACGATG 25752 Query 7088 CC 7089 || Sbjct 25753 CC 25754 Score = 98.7 bits (108), Expect = 9e-16 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315 ||| | ||||||||| | || |||||||| || ||| || ||| | ||||||| Sbjct 25754 GGCATCGTCGAGGAGTTACTCTGGTTCGTTCAAGGCTGCACCGACTCCACGCAGCTCTCC 25695 Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG 34375 || ||| | ||||||||||||| | |||| || || || || || ||||| || Sbjct 25694 GCCAAGGGCATCAAGATCTGGGACGGTAACGGCTCCAAGGAGTTCCTCGAGAAGCGCGGC 25635 Query 34376 TT--CCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACT 34433 | ||| ||| | ||||||| | || || |||||||| ||||||||| | |||| Sbjct 25634 CTGGGCCA--CCGGCGCGCGGGCGACCTCGGGCCCGTCTACGGCTTCCAGTGGCGGCACT 25577 Query 34434 TTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGC 34493 |||| || |||| || |||| ||||| || |||| |||| | |||||||| | Sbjct 25576 TTGGCGCCTCGTATGAGGACTGCGACGCGGAATACACGGGCAAGGGCGTTGACCAGCTCC 25517 Query 34494 AG 34495 || Sbjct 25516 AG 25515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252700722320