Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq561 100 2e-16 seq1277 91.5 1e-13 >seq561 Length=237278 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||||||||| || || || || || || | || || || |||| || | ||| Sbjct 97602 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAACTGC 97661 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | | ||| |||||| ||| ||| Sbjct 97662 TTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTC 97721 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | ||| || ||||| || |||| |||||| | || ||||| Sbjct 97722 GCCTTCA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTGCCCGT 97780 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 |||||| || || ||||| ||||| Sbjct 97781 CAGCGTCTTGACGAAGATCTGCAT 97804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAA 39151 ||| || || || || || |||| |||| || || | || |||||||| || || || | Sbjct 98122 CTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGACCATCCTCAAGCTGCTTTCCAGCGA 98180 Query 39152 ATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 | || |||||||||||||| | ||| | || ||| |||||| ||| ||| |||| Sbjct 98181 AGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACAT 98240 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||| || || | ||||| | || || |||| || || | Sbjct 98241 TGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 98300 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 98301 CAAAGATCTGCAT 98313 >seq1277 Length=70460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || |||| || || || |||| || | ||| Sbjct 15085 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGC 15144 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || |||||||||||||||| || | || ||| || ||| || ||| Sbjct 15145 TTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTC 15204 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | ||| ||| |||||||| |||| |||||| | || || || Sbjct 15205 GCCTTCA-CGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGT 15263 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| ||||| Sbjct 15264 GAGCGTCTTGACGAAGATCTGCAT 15287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429536538064403