Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1277 158 3e-33 seq561 141 2e-28 >seq1277 Length=70460 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||||||| ||||| || || |||| ||||| || | | || Sbjct 15802 ACGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGT 15861 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| || |||||||| || |||||||| || ||||| || || || || || || Sbjct 15862 GCGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCC 15921 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || | || || || | Sbjct 15922 CTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAACCTCGAG 15981 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||| | || || | ||| | ||||| Sbjct 15982 GGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16023 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| |||||||| | || ||| | || || Sbjct 15304 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCC 15363 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| | || || ||||| || |||||||| ||||||||| Sbjct 15364 TCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 15423 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || | || || ||| Sbjct 15424 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTC 15483 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||| | ||||| Sbjct 15484 TTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || || || || || || | ||||| || | ||| || || ||||| || | Sbjct 15588 CAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGA 15647 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| | || || ||||||||||| || || |||||||| |||| Sbjct 15648 GCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGA 15707 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| |||||| |||||||| || || | || || || | || || ||||||| Sbjct 15708 TCTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGC 15767 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | ||| | ||||| Sbjct 15768 CGGTCAACGTCTTCACGAAGATCTGCAT 15795 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||| || || || || |||| ||||| |||| | || | || || || | | Sbjct 15082 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAAC 15141 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||||||||| ||||| || || || |||||||| || || || ||||| || || ||| Sbjct 15142 TGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATC 15201 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| ||||| ||||| |||| ||||| || | |||||||||||| || Sbjct 15202 TTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCG 15261 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 15262 GTGAGCGTCTTGACGAAGATCTGCAT 15287 >seq561 Length=237278 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||||||||||||||| ||| || || |||| ||||| || | | || Sbjct 97584 CGGAGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTG 97643 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || | |||||| || |||||||| || || || ||||||||||| || || Sbjct 97644 CGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCC 97703 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| ||||| ||||| |||| || || || | | Sbjct 97704 TCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGC 97763 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| || || | ||| | ||||| Sbjct 97764 GTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 97804 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || || || || || |||| ||||| |||| ||| || | ||||| || | Sbjct 98106 CAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAA 98165 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| || || || ||||| || ||||| || |||||||| |||| Sbjct 98166 GCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA 98225 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| ||||||||||| || | || || || | ||||| ||||||| Sbjct 98226 TCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGC 98285 Query 225686 CCGTCAAAGTTTT 225698 | ||||| || || Sbjct 98286 CGGTCAAGGTCTT 98298 Score = 116 bits (128), Expect = 9e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||| ||| || || || || || |||| ||||| |||| |||||||| |||||||| | Sbjct 92832 CAATGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGA 92891 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||||||||| || || || || |||| | | || |||||||| || | Sbjct 92892 GCTGCTTGCCAGCGAAGATGAGACGCTGGGTGTTTGGCGCAGTGCCCTCCTTGTCATGAA 92951 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 ||||| |||||| |||||| ||||| || | | || | ||||| ||||||| Sbjct 92952 TCTTTGCCTTCACGTTTTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGC 93011 Query 225686 CCGTCAAAGTTTTTATGAA 225704 | |||| || || | ||| Sbjct 93012 CGGTCACGGTCTTGACGAA 93030 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | ||| | || || Sbjct 97821 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 97880 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || ||||| |||||||| Sbjct 97881 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCC 97940 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| || | || || || | ||||||||| Sbjct 97941 TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTC 98000 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||| || || | ||| | ||||| Sbjct 98001 TTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 105 bits (116), Expect = 2e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||| | | |||||| |||| || || | | ||| || ||||| || |||| |||||| Sbjct 93963 TTTCGTATATTGTAGTCGGACACGGTGCGGCGATCGTCAAGCTGTTTGCCAGAGAAGATG 94022 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || ||||||| ||| | | ||| |||||||| |||||| | ||||||| ||||| Sbjct 94023 AGGCGCTGTTGGTTGGGGGCGACACCCTCCTTGTCCTGGATCATCGCCTTCACATCTTCG 94082 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 |||||| ||| | ||||| || | |||||| | |||||| Sbjct 94083 ATGGTGGTTGACGCCTCCACCTCGAGCGTGATGGCCTTGCC 94123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192504751521314