Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1277 113 1e-19 seq561 113 1e-19 >seq1277 Length=70460 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 15812 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCC 15871 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||| || | | ||| || ||||| || Sbjct 15872 TCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTGTCC 15931 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||| || ||| || || || || || || Sbjct 15932 TGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTC 15991 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| ||||||| |||||| Sbjct 15992 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16023 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| || || |||||||| || | || || || ||||| || | Sbjct 15588 CAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGA 15647 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| | | ||||||||| | || ||| || ||||| || || | Sbjct 15648 GCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGA 15707 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| ||| || || || ||||| || |||| Sbjct 15708 TCTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGC 15767 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||||||||||| |||||| Sbjct 15768 CGGTCAACGTCTTCACGAAGATCTGCAT 15795 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || |||||||| ||||| || |||||||||||||| | | ||| | || || Sbjct 15304 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCC 15363 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||||||||| | | ||||||||| | | || || ||||| ||| Sbjct 15364 TCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 15423 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| ||| ||| || || || ||||| || Sbjct 15424 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTC 15483 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||| ||||||| |||||| Sbjct 15484 TTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 || || || || ||||| || ||||||||||| |||| | || | || || || | Sbjct 15082 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAAC 15141 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 ||||| || ||||| || | ||||||||| | | ||| || ||||| || ||||| Sbjct 15142 TGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATC 15201 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || || | || | |||| || ||| || || || || || || || || Sbjct 15202 TTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCG 15261 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||| |||||| Sbjct 15262 GTGAGCGTCTTGACGAAGATCTGCAT 15287 >seq561 Length=237278 Score = 113 bits (124), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| |||| || || | ||||| || | Sbjct 98106 CAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAA 98165 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| || | ||||||||||| | || || ||||| || || Sbjct 98166 GCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 98223 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | |||| || ||| || ||||| || || || || Sbjct 98224 GATCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTT 98283 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | ||||| || |||| |||||| Sbjct 98284 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 98313 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| || | | ||| | || || Sbjct 97820 GAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTC 97879 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| || | |||||| |||| | ||| || ||||| || Sbjct 97880 CTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTC 97939 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | | |||| || ||| || || || || || || Sbjct 97940 CTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGT 97999 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| ||||||| |||||| Sbjct 98000 CTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||| || ||||||||||| || | | || | || || Sbjct 97593 AGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 97652 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||||||||| || | ||||||||| | || ||| || ||||| || Sbjct 97653 TCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCC 97712 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || | || | |||| || ||| || || || || || || Sbjct 97713 TGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTC 97772 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||||| |||||| Sbjct 97773 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 97804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795210057501