Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq561 185 2e-41 seq1277 179 8e-40 seq1532 104 5e-17 seq722 98.7 2e-15 seq318 93.3 9e-14 >seq561 Length=237278 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || || || || | |||||| || || |||||||||||||| | Sbjct 97578 CCACCGCGGAGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 97637 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| | || || ||||| ||||||| || || ||||| ||| Sbjct 97638 AGCGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 97697 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||| | || || Sbjct 97698 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACC 97757 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 97758 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 97804 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || || || || | || || || |||||||||||||| | | Sbjct 97806 CCGCCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 97865 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || ||||||| || || || || || Sbjct 97866 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGG 97925 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| || ||||| || || ||| | ||||| ||||| || | ||||| Sbjct 97926 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 97985 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||||||||||| ||||| ||||| |||||||| Sbjct 97986 TCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 145 bits (160), Expect = 2e-29 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || || |||||||||||||| | |||| ||||| |||||||| || || || || || || Sbjct 98123 TCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 98181 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | ||| || ||||| ||||| ||||||||||| |||||||| || || || | Sbjct 98182 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 98241 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || | ||||| || || ||||| ||||| || ||||| ||||| || Sbjct 98242 GTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 98301 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 98302 AAAGATCTGCAT 98313 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 || || || | |||||| || || ||||||||||| || | ||||||||||| ||||| Sbjct 95765 ACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCC 95824 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || | || ||| ||||| | ||| |||||||| ||| || |||||||||| ||| Sbjct 95825 AGCGGCTTGTTGGCGAAGATGAGACGCTGTTGGTCGGACGGGATCGCCTCCTTGTCCTGG 95884 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || ||| | |||| |||||||| | | ||| || | | |||||||| | Sbjct 95885 ATCTTCGCCTTCACGCTGCCGATCGTGTCCGATGGCTTGACCTCCAAGGGGATCGTCTGA 95944 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | | ||||| |||||||| ||||| Sbjct 95945 CCCATGAGGGTCTTGACGAATATTTGCAT 95973 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | | || |||||||| || || || || || || ||| Sbjct 92849 TCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGAGCTGCTTGCCAGCGAAG 92908 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || || | | ||||||||||| || |||||||| || ||| | Sbjct 92909 ATGAGACGCTGGGTGTTTGGCGCAGTGCCCTCCTTGTCATGAATCTTTGCCTTCACGTTT 92968 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || | | | || || ||||| ||||| || |||| ||||| ||| Sbjct 92969 TCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGCCGGTCACGGTCTTGACG 93028 Query 283089 AATATCTG 283096 || ||||| Sbjct 93029 AAGATCTG 93036 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | || || || ||||| | ||||| ||| Sbjct 98542 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCCGAGGACTCGACCTCG 98601 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 98602 AGCGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 98645 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 282916 GGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAAC 282975 |||||||||| || | |||||||| | |||||||| || | |||| || | | | Sbjct 93683 GGATGTTGTAATCCGAGAGCGTGCGATCGTCCTCTAGCTGCTCTTCGGCGAACTTGATGC 93742 Query 282976 GTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAG 283035 || ||||| | | | || |||||| || ||||| ||||| ||| | |||| | Sbjct 93743 TCTGCTGGTCGGGCCGGGTCCCTTCCTTGGTCTGAATCTTCGCTTTGACGCTGCCGATCG 93802 Query 283036 TGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095 ||||| | | | ||| || || ||||||||||| |||| | ||||| ||||| || | Sbjct 93803 TGTCCAACGGCTTGACCTCCAGGGTGATCGTCTTCCCCGAGAGGGTCTTGACGAAGATTT 93862 Query 283096 GCAT 283099 |||| Sbjct 93863 GCAT 93866 >seq1277 Length=70460 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| ||||| || || || | ||| || || ||||||||||| || | Sbjct 15289 CCGCCGCGCAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAC 15348 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| | || || ||||| |||||||| || || ||||| ||| Sbjct 15349 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 15408 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 15409 ATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACC 15468 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 15469 TCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 15796 ACCGCCACGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 15855 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || ||||| ||||| | |||||| || || || Sbjct 15856 GAGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGG 15915 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || || | ||||| |||||||| | || || Sbjct 15916 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAAC 15975 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 15976 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16023 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | | ||| | ||||||||| || || || || || ||| Sbjct 15605 TCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAAG 15664 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| || ||||| ||| || ||||||||||| |||||||| || || ||| | Sbjct 15665 ATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 15724 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || |||| || || ||||| || || ||||| || ||||| ||||| ||| Sbjct 15725 TCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCACG 15784 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 15785 AAGATCTGCAT 15795 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||||||||||| ||||| | || ||||| |||||| Sbjct 15097 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCAAAG 15156 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || ||||| || || |||||||| || || ||||| || || ||| | Sbjct 15157 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTG 15216 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||||||||| || || | ||||| ||| Sbjct 15217 TCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTGACG 15276 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 15277 AAGATCTGCAT 15287 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| || | ||||| ||| Sbjct 16202 CCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCGACCTCG 16261 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||||| ||||| || || | |||||||||||| ||||||||| Sbjct 16262 AGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATT 16306 >seq1532 Length=168184 Score = 104 bits (114), Expect = 5e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| || |||||| | || || ||||| ||||| ||||| ||| | Sbjct 155658 CTCATCGGCATGAACGCCACGCTCATGCGCCAGTACATCGAGTTCGTTGCTGACCGTCTA 155717 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || ||||| || ||||| | || ||| || |||||| |||| || ||||| Sbjct 155718 CTGGTTGCGCTCGGCGGAGAGAAGTTCTACAACGTCACGAACCCTTTCGACTTCATGGAC 155777 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401 | || || |||||||| ||||| ||||||||||| ||||| || ||| || || ||| Sbjct 155778 ATGATCTCGCTCCAGGGCAAAACGAACTTCTTCGAGAAGCGCGTGTCCGACTACTCGAAG 155837 Query 230402 GC 230403 || Sbjct 155838 GC 155839 >seq722 Length=257698 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||||||||| || | ||||| || Sbjct 226184 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCA 226243 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||| ||||| ||||| | ||||| ||||| |||||||| |||| Sbjct 226244 AGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTTCA 226292 >seq318 Length=85141 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 |||||||||||||||||||| || || || | ||||| |||||||| | || || ||| Sbjct 71838 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 71897 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 71898 AGGGTGATGGTTTTGCCCGTGAGGGTCTTTACGAAAATCTGCAT 71941 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | || || || |||||||||||||| Sbjct 71655 ACCACCACGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCT 71714 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||||||||| || || || ||||| ||||||| || || ||||| Sbjct 71715 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 71768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046715984960074