Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1277 170 1e-37 seq561 158 9e-34 >seq1277 Length=70460 Score = 170 bits (188), Expect = 1e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44130 CCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCA 44189 ||||||| ||||| |||||| ||||||||||| |||| ||| ||| |||| |||| Sbjct 15080 CCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 15139 Query 44190 GCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTA 44249 ||||||||| |||||||| | ||||||||| || | ||| | || ||||| ||| | Sbjct 15140 ACTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAA 15199 Query 44250 TCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 ||||| ||||| | | || ||||||| ||| |||||||||| ||| |||||||| | Sbjct 15200 TCTTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCC 15259 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| ||||| |||||||| |||||| Sbjct 15260 CGGTGAGCGTCTTGACGAAGATCTGCATG 15288 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| || | ||| |||| | || || Sbjct 15815 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCCTCA 15874 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||| |||||||||| || | || ||||| ||| Sbjct 15875 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 15934 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | |||||||| | || || ||||| | || |||||||| Sbjct 15935 ATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTG 15994 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||| |||||||| |||||| Sbjct 15995 CCCGTGAGGGTCTTGACGAAGATCTGCATG 16024 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| |||||||||||||| | || ||| |||| ||| Sbjct 15307 ACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCC 15366 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||| |||||||| |||||||| |||| || | ||| ||||| || Sbjct 15367 AACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 15426 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | || ||||||| || || ||||| | ||||| ||||| Sbjct 15427 ATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTC 15486 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| |||||||| ||||| Sbjct 15487 CCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 111 bits (122), Expect = 1e-19 Identities = 154/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCG 44185 ||||| ||||||| || |||||| || |||||||| || | | | | || | || Sbjct 15585 CACCAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGC-CATCC 15643 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || |||||||| || || ||||||||||||||||| || | || | || ||||| ||| Sbjct 15644 TCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 15703 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 |||||| ||||| | | ||||| |||| || || ||||| | ||||| ||| Sbjct 15704 TGGATCTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTC 15763 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | |||||||||||||| ||||| Sbjct 15764 TTGCCGGTCAACGTCTTCACGAAGATCTGCAT 15795 >seq561 Length=237278 Score = 158 bits (174), Expect = 9e-34 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| |||||||||||||| ||||||||||| || | ||| ||| |||| ||| Sbjct 97596 ACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCC 97655 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||| ||||||| |||||||| || | || | || ||||| ||| Sbjct 97656 AACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGG 97715 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || ||||| | ||| || ||||||| ||| |||||||| Sbjct 97716 ATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTG 97775 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || ||||| |||||||| |||||| Sbjct 97776 CCCGTCAGCGTCTTGACGAAGATCTGCATG 97805 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||| ||||| || || |||||| ||||||||||| || Sbjct 97802 CATGCCGCCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 97861 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || ||||||| ||||||||||| | Sbjct 97862 CGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGG 97921 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| ||| |||||| ||| | | | |||||||||| || || Sbjct 97922 AGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTC 97981 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || |||||||| ||||| |||||||| |||||||| ||||| Sbjct 97982 GACCTCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 136 bits (150), Expect = 3e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| |||||||||||||| |||||||||||||| | ||| ||| |||| ||| Sbjct 95765 ACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGGCCGTCCTCC 95824 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||| |||| ||| ||||| | |||||| || || || || | | ||||| ||| Sbjct 95825 AGCGGCTTGTTGGCGAAGATGAGACGCTGTTGGTCGGACGGGATCGCCTCCTTGTCCTGG 95884 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | || || ||||| | | | ||||||| | ||||||| Sbjct 95885 ATCTTCGCCTTCACGCTGCCGATCGTGTCCGATGGCTTGACCTCCAAGGGGATCGTCTGA 95944 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATGA 44348 ||| |||||||||| ||||| ||||||||| ||| || || Sbjct 95945 CCCATGAGGGTCTTGACGAATATTTGCATGCTGTCAAGGA 95984 Score = 113 bits (124), Expect = 3e-20 Identities = 157/214 (73%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCG 44185 ||||| ||||||| || |||||| ||||||||||| |||| | || | ||| | || Sbjct 98103 CACCAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGT-GCGACCATCC 98161 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || |||||||| || || ||||| | ||||||||| || | || | || ||||| ||| Sbjct 98162 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 98221 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 |||||| ||| || ||| | |||||||||| || || ||||| | || || | Sbjct 98222 TGGATCTTCGCCTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCAAGGGTGATGG 98279 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || | |||||| || ||||| ||||| Sbjct 98280 TCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 98313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 44128 CACCA-GGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGT 44186 ||||| |||| || ||| |||||| || |||||||| || | ||| |||| |||| | Sbjct 98383 CACCAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGCCCGTCCT 98442 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 | |||||||||||||| ||||| | ||||||||| || | ||| Sbjct 98443 CGAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCCGGAGG 98485 Score = 82.4 bits (90), Expect = 5e-11 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 44154 GGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAAC 44213 ||||||||||||| | ||| ||| ||||| || ||||||| |||| || | | | Sbjct 93683 GGATGTTGTAATCCGAGAGCGTGCGATCGTCCTCTAGCTGCTCTTCGGCGAACTTGATGC 93742 Query 44214 GCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATG 44272 |||||| || | | |||||||| | |||||| |||| | | | || || Sbjct 93743 TCTGCTGGTCGGGCCGGGTCCCTTCCTTGGTCTGAATCTTC-GCTTTGACGCTGCCGATC 93801 Query 44273 GTGTCGG-CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 ||||| ||| || ||||||| || |||||||| |||| ||||||||| |||||||| Sbjct 93802 GTGTCCAACGGCTTG-ACCTCCAGGGTGATCGTCTTCCCCGAGAGGGTCTTGACGAAGAT 93860 Query 44332 TTGCAT 44337 |||||| Sbjct 93861 TTGCAT 93866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982805440027