Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq561 187 2e-42 seq1277 145 7e-30 seq318 118 1e-21 seq722 100 3e-16 >seq561 Length=237278 Score = 187 bits (206), Expect = 2e-42 Identities = 183/231 (79%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || ||||||||||||||||| ||||| ||||| || Sbjct 97577 GCCACCGCGGAGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 97636 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 ||| ||||| |||| || | ||||||||||||||| ||||||||||| ||||| |||| Sbjct 97637 GAGCGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 97696 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | | |||||||||| ||| || |||| ||| | | | ||||| ||||| Sbjct 97697 GATC-CCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCGATCGTGTCCGAGGACTCA 97754 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| ||| ||||| || |||||||||||||| ||||| ||||||||| Sbjct 97755 ACCTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 97805 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||| || || || || ||||||||| ||||| ||||| || Sbjct 97805 GCCGCCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 97864 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||||||||| ||||| ||||||||||| || |||| || Sbjct 97865 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGG 97924 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || || | ||| | | | |||||| |||||| | Sbjct 97925 GATACCCTCCTTGTCC-TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGA 97983 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 97984 CCTCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 129 bits (142), Expect = 5e-25 Identities = 168/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 ||||| ||| | | || || || ||||||||||||||||| ||||| || || ||||| Sbjct 95750 CCGCGGAGAAGCATGACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGC 95809 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGGGAAC 41757 ||||| |||| || ||| ||||| |||||| || || ||||||||||| | ||||| | Sbjct 95810 GTGCGGCCGTCCTCCAGCGGCTTGTTGGCGAAGATGAGACGCTGTTGGTCGGACGGGATC 95869 Query 41758 GCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCT 41816 || |||||||||| ||| || |||| ||| | | | ||||| | || |||| Sbjct 95870 GC-CTCCTTGTCCTGGATCTTCGCCTTC-ACGCTGCCGATCGTGTCCGATGGCTTGACCT 95927 Query 41817 CCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | ||||| | |||| | || ||||| ||||| || |||||| Sbjct 95928 CCAAGGGGATCGTCTGACCCATGAGGGTCTTGACGAATATTTGCATG 95974 Score = 107 bits (118), Expect = 2e-18 Identities = 84/99 (85%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | ||||| ||| ||||||||||||||| ||||| ||||| |||||| |||| | Sbjct 98383 CACCAAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTGCGCCCGTCCT 98442 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||||| |||||||| || || ||||| ||||||| Sbjct 98443 CGAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCCG 98481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 ||||| || ||||||||| ||||| |||||||| | || || | || ||||||||| Sbjct 92837 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGAGCTGC 92896 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||| ||||| || || ||||| || | | | || |||||||| ||||| | || Sbjct 92897 TTGCCAGCGAAGATGAGACGCTGGGTGTTTGGCGCAGTGCCCTCCTTGT-CATGAATCTT 92955 Query 41780 TGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 ||| | ||| | | ||||||| |||| |||||| || || || || || || Sbjct 92956 TGCCTTCACGTTTTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGCCGGT 93015 Query 41839 CAGCGTCTTTACGAAAATCTG 41859 || ||||| ||||| ||||| Sbjct 93016 CACGGTCTTGACGAAGATCTG 93036 >seq1277 Length=70460 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || || ||| ||||||||| ||||| || || || Sbjct 15288 GCCGCCGCGCAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGA 15347 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || | ||||||||||||||| |||| |||||| ||||| | ||| Sbjct 15348 CAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGG 15407 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||| | || | || || | ||| | | | |||||| ||||| | Sbjct 15408 AATACCCTCCTTGT-CTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGA 15466 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || ||||||| |||||| ||||| |||||||| Sbjct 15467 CCTCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || || || || ||| ||||||||| ||||| ||||| ||| Sbjct 15797 CCGCCACGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 15856 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| | || || ||||||||||||||||| || || || || || || | ||| Sbjct 15857 AGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 15916 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || |||| || | | | ||||| |||||| || Sbjct 15917 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATGGTGTCCGACGACTCAAC 15975 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 15976 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 16024 Score = 141 bits (156), Expect = 9e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 |||| || ||||| ||||||||| ||||| ||||||||||| ||||| |||| || | Sbjct 15080 CCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 15139 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||| || || || || || ||||| ||||| | || | || |||||| ||| ||| Sbjct 15140 ACTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC-TGA 15198 Query 41775 TTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 | || || | ||| | | | |||||| ||||||||||||| ||| ||||| || Sbjct 15199 ATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTC 15258 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||||||| ||||| ||||||||| Sbjct 15259 CCGGTGAGCGTCTTGACGAAGATCTGCATG 15288 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||| || | || | | || |||||||||||||| ||||| Sbjct 15604 CTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAA 15663 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| ||||| ||||| | || | || |||||||||| ||| || |||| ||| Sbjct 15664 GATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGT 15722 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | || ||| ||||| ||||| | || || || || || |||| |||||| | Sbjct 15723 TGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCA 15782 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 15783 CGAAGATCTGCAT 15795 Score = 109 bits (120), Expect = 5e-19 Identities = 98/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || ||||| || ||| ||||||||| ||||| ||||| || Sbjct 16024 GCCTCCGCGAAGACGGAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 16083 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 ||||| || |||| |||||||||||||| || || ||||||||||| ||||| |||| Sbjct 16084 AAGGGTACGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGG 16143 Query 41754 GA 41755 || Sbjct 16144 GA 16145 >seq318 Length=85141 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||| || || || ||||||||| ||||| |||||| | Sbjct 71656 CCACCACGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 71715 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| ||||||||||| ||||| | |||| Sbjct 71716 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 71775 Query 41756 ACGCT 41760 | ||| Sbjct 71776 ATGCT 71780 >seq722 Length=257698 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||||||||||||||| |||||| |||||| || |||| ||| Sbjct 226018 ACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTACGGCCGTCCTCG 226077 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTC 41763 ||||||||||| ||||| ||||| ||||| ||||| | ||| | ||| || Sbjct 226078 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCTATC 226127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462293996897200