Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8 105 1e-17 seq111 93.3 9e-14 >seq8 Length=958091 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| | | || ||| | || |||||||| ||||| || || ||| | Sbjct 469838 CTCATCGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTTGCGGATCGCCTC 469897 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || |||||| |||||| | ||||||||| | || ||||| Sbjct 469898 CTCGTCGCTCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGATTTCATGGAC 469957 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 | || ||||| || || ||||||||||||||||| ||||||||| ||||| || | Sbjct 469958 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCTCGGACTACTCGAAG 470017 Query 230626 CCTGGTGT 230633 ||||||| Sbjct 470018 GCTGGTGT 470025 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGG 230453 || || || || | ||| ||||||||| | || || | || ||| | || || || Sbjct 467127 GAGGCCGTCGAGATCGAGAAGGAGTTCCTCACGGAGGCGCTCCCG-GTCTCGCTCATCGG 467069 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 ||||||||| || ||| | ||||||||||| ||||| || |||||| | | || || Sbjct 467068 CATGAACGCGCGGCTGATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTCGC 467009 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 || || ||||||| ||| | | |||||| |||| || ||||| | || || Sbjct 467008 GCTCGGGAACGAGAAGCACTACCGCGCGGCGAACCCGTTTGACTTCATGGACATGATCTC 466949 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||| || ||||| ||||||||||| ||||| || Sbjct 466948 GCTCACCGGCAAGACGAACTTCTTCGAGAAGCGCGT 466913 >seq111 Length=49823 Score = 93.3 bits (102), Expect = 9e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGA--CCCAAACT 281799 ||| ||||||| | || ||||||||||||||||| || | | ||| || || | Sbjct 11898 GTGTAGATATAACGAGCCGCGGCGTGGTCTTTACCACCTTG--GTCACGAGTACCGAATT 11955 Query 281800 GACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGA 281859 |||| | ||||| | ||| ||||| ||||| |||||||| ||||| || ||||||| Sbjct 11956 GACCGTTCGGCATGAGGAGGTTCATGTTGTTGCTTCCGACGTAGTCCTGTGCGAGGTTGA 12015 Query 281860 CGATTGT-CCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAA 281918 ||| || || | || | | ||||||||||||| |||||| |||| ||||||| Sbjct 12016 TGATGGTGGCCATCAAAC-TTGCCTCACCGTGGTGGTAGGCGGAAATCTCGGAAACATAA 12074 Query 281919 CCACTGAACTGTGCTACCTTCACGTC 281944 || || || || |||| ||||| Sbjct 12075 CCGACGAGTTGGGCGACCTAGACGTC 12100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819852668780