Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq8 156 4e-33 >seq8 Length=958091 Score = 156 bits (172), Expect = 4e-33 Identities = 317/471 (67%), Gaps = 0/471 (0%) Strand=Plus/Minus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 || ||||| | || | || ||| ||||| ||| || | ||||| || | | ||| Sbjct 469694 TTGAGATGGCTGAAGAGCAAACACGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATG 469635 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 || ||||| || || || | || |||||| || || ||||| | ||| || || | | Sbjct 469634 AGCTCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAG 469575 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCG 17122 ||||| || ||||| ||||| |||||||| || | || || ||||| | || |||||| Sbjct 469574 GCGAAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAGGCGATGAGACGCTCGGCG 469515 Query 17123 TACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182 ||| | || |||| |||||| | |||| ||||| || | ||| |||||| Sbjct 469514 AACGCAGACTCCTTGTCGGAAATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAA 469455 Query 17183 TCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 || || || ||||| | || | | ||| | |||| | || || ||| Sbjct 469454 GGAATGGTGTCGATGGCGTCGAAGAGGTGCTCGCGCTGAGCGGGGTCCTTGATGTAGGTA 469395 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || ||||| || ||| | || ||||| ||||||||||| ||||| || ||||| Sbjct 469394 TCAATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAG 469335 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 ||||| || ||||||||| ||||| || | | || | || | || || ||||| Sbjct 469334 AAGCAGCGCGCTTCCGCTGCCTGAACCTCGTTGGAAAACCTCTCGACGAGGTTCTCGTTG 469275 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 ||||||||||| ||||||||| || || | | ||| |||||| ||| Sbjct 469274 ACGATGCCGTCCGACGCGGCGAAGAATGCGAGGACGTGCGAAATGAAGTAT 469224 Score = 118 bits (130), Expect = 1e-21 Identities = 287/433 (66%), Gaps = 4/433 (1%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||| ||| | |||||||| | | ||| || ||||| || || || Sbjct 467186 AGGCACGCGAAGTCGGTATGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTG 467245 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || ||||||||||| || || ||| Sbjct 467246 AGGCCGGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAG 467305 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || | |||||||||| || ||||||| | || || || | | | | || Sbjct 467306 AAGACGCCCTCGACGGCGGCGAACGCGACGAGCCGCTCCGCAAAAGCAGAACGCTCGTCC 467365 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||||| | |||| ||||| || | ||| ||||| || || || ||||| Sbjct 467366 GCGATCCACCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCG 467425 Query 17201 TTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | || | | | | | | | ||||| || || || |||||||| || || Sbjct 467426 TCGAAGAGGAAGGCGCGCTCGGCGG--GGTCGCGGATGTAGGTGTCGATGAGGAGCGAGT 467483 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 || | |||| ||| | |||||| || || || || || |||||||| || || |||| Sbjct 467484 ACGTCTCGGCGTGCACGTTCTCGATCATGATTTGGAAGCCATAAAAGCAGCGCGCCTCCG 467543 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | || || || | |||| |||||| | || ||||||||||||||||| || | Sbjct 467544 CGGCCTGCACCTCGTTGGAGAAGCGTTCCACGAGGTTTTCGTTCACGATGCCATCCGAGG 467603 Query 17379 CGGCGAAAAACGC 17391 |||||||||| || Sbjct 467604 CGGCGAAAAAGGC 467616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543620388080