Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq6 156 5e-33 >seq6 Length=1235503 Score = 156 bits (172), Expect = 5e-33 Identities = 244/346 (71%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGG--GGTTCCTCTTG-ATCTCC 145980 || || ||||| |||| ||||| || |||||| |||| || || | || |||| Sbjct 27919 GCGGGATTCCATGCGGAGAGGATGA---TCCTGCGGTCGGTAGGGTCGTGTTTTATCTTG 27863 Query 145981 CCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACG 146040 | || ||| ||||||||| ||||||| || || || | | | ||||| || Sbjct 27862 CGAATGCACTCCTGGAGCTGGTCGACGCCCTTGCCGGTATAGTCGGCGTCGCAGTCCTCG 27803 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 || || |||||||||| ||||||||| ||||| ||||| || ||||| || Sbjct 27802 TATTGCGCGCCGAAGTGCCGCCACTGGAAGCCGTAAACGGGGCCGAGGTCGCCTTCGCGT 27743 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 |||||||| || ||| | ||||||||||| ||| || ||| |||||||||||||| Sbjct 27742 CTGTGCCCTAGGCCGCGCTTCTCGAGGAAGTCCTTGGAGCCATTGCCGTCCCAGATCTTG 27683 Query 146161 ACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCT 146220 | |||| | |||||||||| |||||||| ||| | || || ||||||||| ||||| Sbjct 27682 ATGCCCTTTGCGGAGAGCTTCTTGGAGTCTGTGCAGCCTTGGACGAACCAGAGGAGCTCC 27623 Query 146221 TCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 |||| || || | |||| | || ||||| || ||||||| Sbjct 27622 TCGACGATGCCGCGGAGGAAGGTGCGTTTTGTGGTGAGGAGGGGGA 27577 Score = 156 bits (172), Expect = 5e-33 Identities = 229/319 (72%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||||| ||| | ||| || ||| |||| ||||||||||| |||||||||| || Sbjct 28378 CATCTTCATAGCAATGCTCGGGTGCGGGTCGTAGCCCTCCACGACAAAGTCCTCGCTCCG 28319 Query 145605 GAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GGGAAAGGGCCGGGGGC 145663 |||||| || ||| ||| ||| | | | ||||||| | ||||| |||| | ||| Sbjct 28318 GAAGTCGTCGATGCTCTCGACCGTGCGCGGCCACCTGAGCTTCGGGAACGGGC--GCGGC 28261 Query 145664 TCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCC 145722 || | || |||||| | | || | || ||||||| | |||||||||||||||| || Sbjct 28260 TCGCGCTCGAGCTGGGTCCTGAGCGCGTCGACGTGGTCGCGGTAGACGTGCGCGTCGCCG 28201 Query 145723 AGGACGTGGATGAAGTCCCCGGGCTCGAGGC---CCGTGAGGTGGGCGACCATGTAGGTC 145779 || ||||| | | | || || || | | |||| |||||||||||||| || Sbjct 28200 AGC---TGGATCACGAGCTCGTGCGGGACGGTGTCGGTGACGTGGGCGACCATGTGCGTG 28144 Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839 || |||| |||| ||| ||||||||||| | || ||||| | ||| | ||||||||| Sbjct 28143 AGGAGGGCGTAGGAGGCGATGTTGAAGGGGATGCCGAGCCCGAGGTCGGCGGAGCGCTGG 28084 Query 145840 TACAGCTGGCAGGAGAGCT 145858 |||| |||||||||||| Sbjct 28083 TACATGAGGCAGGAGAGCT 28065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074542956240