Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8 426 2e-114 seq4 140 3e-28 seq29 120 3e-22 seq9 114 1e-20 seq13 109 6e-19 >seq8 Length=958091 Score = 426 bits (472), Expect = 2e-114 Identities = 586/808 (73%), Gaps = 11/808 (1%) Strand=Plus/Minus Query 116629 CCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 |||| | || |||| |||||||| | ||| | ||||| || ||||| ||||||||| | Sbjct 467752 CCCGTAGATATGGCAGATGTACAAGACTGCCCAAGCGTCCTTTTGGACAGTCGAGGAGAT 467693 Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTT 116745 |||| || | ||| | |||||| | || | |||||||||||||| || || Sbjct 467692 TAACCTCTCGTATGACCTTATGGACTGGAATGGCAAGCTAAACGACAACGAGCGGCACTT 467633 Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 |||| ||||||| ||||||||||||||| || |||||||| ||||| || || || Sbjct 467632 CATCTCCTACGTGCTCGCCTTTTTCGCCGCCTCGGATGGCATCGTGAACGAAAACCTCGT 467573 Query 116806 CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 || || ||| | | |||||||||| || |||||||| ||||| || ||||| || || Sbjct 467572 GGAACGCTTCTCCAACGAGGTGCAGGCCGCGGAGGCGCGCTGCTTTTATGGCTTCCAAAT 467513 Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTC 116925 | || |||||||||||| | || | ||| ||| |||||||||||| ||| | ||| Sbjct 467512 CATGATCGAGAACGTGCACGCCGAGACGTACTCGCTCCTCATCGACACCTACATCCGCGA 467453 Query 116926 TTCGGAGGAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGA 116984 | | ||| || || | | || |||||||||| || || || ||| |||| ||| Sbjct 467452 CCCCGCCGAGC-GCGCCTTCCTCTTCGACGCCATCGACACCATACCCTGCATCAAGAAGA 467394 Query 116985 AGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG-AGCGCCTG 117043 ||||||| ||||| || || |||||||| | | ||| | | ||| ||| |||| || Sbjct 467393 AGGCCGACTGGGCCCTCCGGTGGATCGCGGAC-GAGCGTTCTGCTTTTGCGGAGCGGCTC 467335 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || ||||| |||||||||||||||||||| || ||| ||||||||||| || ||| Sbjct 467334 GTCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGG 467275 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| ||||| |||||||||||||| || ||| |||||||||||||||| | ||| Sbjct 467274 CTCAAGAAGCGCGGGCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGAC 467215 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG-AG 117222 ||||| ||||| |||||| || || | || ||| | || | | ||| ||| | Sbjct 467214 GAGGGCATGCATACCGACTTCGCGTGCCTCCTCTTCCACCACCTCCGCCGGCGGCCGCAC 467155 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | | || ||||| |||||| |||| || |||| |||||| || |||||||| Sbjct 467154 CCCCGC-CGCGTGCTCCGCATCGTCGCCGAGGCCGTCGAGATCGAGAAGGAGTTCCTCAC 467096 Query 117283 CGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCG 117341 || ||||| ||||| || | || | || ||| | ||||| || ||||||| Sbjct 467095 GGAGGCGCTCCCGGTCTCGCTCATCGGCATGAA-CGCGCGGCTGATGTGCCAGTACATCG 467037 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401 |||||||||| ||| | ||||| ||| ||| | || ||||||||| | || | | Sbjct 467036 AGTTCGTCGCGGACCGCCTGCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCGGCGA 466977 Query 117402 ACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| | ||||| ||| || | ||||| Sbjct 466976 ACCCGTTTGACTTCATGGACATGATCTC 466949 Score = 340 bits (376), Expect = 2e-88 Identities = 421/576 (73%), Gaps = 19/576 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| |||||||| |||||||| | |||||| ||||| || Sbjct 469117 ATCTGGCAGATGTACAAGAAGGCTGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACTTG 469176 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | | | | |||| | ||||| | ||||| | Sbjct 469177 TCCAAGGATCTGCACGACTGGAACAACAAGCTCACCGACGATGAGCGATACTTCATTTCG 469236 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| |||||||||||||||||||| || |||||| | Sbjct 469237 CACGTCCTCGCATTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTCGTCGAGAGG 469296 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | | ||||| |||| || || ||||| |||||||||||||| ||||| ||| Sbjct 469297 TTTTCCAACGAGGTTCAGGCAGCGGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 469356 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTG--------CGCT 116924 |||||| | |||||||| | || ||| |||||| || || ||| | |||| Sbjct 469357 GAGAACATCCACTCGGAGACCTACTCGCTCCTCATTGATACCTACATCAAGGACCCCGCT 469416 Query 116925 CTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGA 116984 | || ||| | ||| || |||||||||| || || || ||| |||| ||| Sbjct 469417 CAGCGC--GAGCACCTC------TTCGACGCCATCGACACCATTCCTTGCATCAAGAAGA 469468 Query 116985 AGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGG 117044 ||||||| ||||| || |||||||| ||| || ||| | || |||| |||||| || Sbjct 469469 AGGCCGACTGGGCTCTTCGCTGGATTTCCGACAAGGAGTCTGCGTTCGCCGAGCGTCTCA 469528 Query 117045 TGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGC 117104 | |||||||| || || ||||| ||||||| || || |||||| |||| || |||| Sbjct 469529 TCGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGATCCTTCGCCTCCATCTTCTGGC 469588 Query 117105 TCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACG 117164 ||||||| || ||| | ||||| ||||| || ||| |||||||||||||||| | || | Sbjct 469589 TCAAGAAGCGTGGCTTGATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGATG 469648 Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||| |||| |||||| || |||||||| |||| Sbjct 469649 AGGGCATGCACACCGACTTCGCGTGTTTGCTCTTCA 469684 >seq4 Length=1487122 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||||||||| ||||||||| | || ||||| | || Sbjct 23779 ATGCAAATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTTCC 23720 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 23719 GACACGATCGACAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCA 23661 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||| |||| |||| || || || |||||||| Sbjct 23660 GCAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACAA 23601 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||||||| || Sbjct 23600 CATTCAGAAGGAGTCCACGCTTCA 23577 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| |||| || || | | Sbjct 24288 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 24229 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||||||||| | |||||| Sbjct 24228 GACACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 24169 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | ||||| | ||||||||| Sbjct 24168 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAAC 24109 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||||| || ||||| | | ||||| Sbjct 24108 ATCCAGAAGGAGTCCACCCTCCATCTCGTTCTGCGCCTCCGTGGCGG 24062 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || ||||| || | || || || || | Sbjct 23551 ATGCAGATCTTCGTCAAGACGCTCACAGGGAAGACCATTACGCTGGAGGTTGAGTCCTCG 23492 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||| || ||| ||||||| Sbjct 23491 GACACGATCGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCA 23433 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || ||| |||| |||| ||||| ||| ||||||||| Sbjct 23432 GCAACGTCTTATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAA 23373 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||||||||||| | ||||| || || Sbjct 23372 CATCCAGAAGGAGTCGACGCTTCACCT 23346 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| || ||||| | || ||||| | | Sbjct 24060 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTTCT 24001 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| || || ||||| ||||| | ||||| Sbjct 24000 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACCA 23942 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| | |||||||| Sbjct 23941 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACGTTGTCGGACTACAA 23882 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||||||||||| | || || || || Sbjct 23881 CATCCAGAAGGAGTCTACCCTTCACCT 23855 Score = 93.3 bits (102), Expect = 4e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 ||||||| | |||||||| || || |||| ||||||||| ||||| || |||| |||| Sbjct 24413 GCATCCCTCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCA 24354 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | || ||||||||||||||||||||| |||| || || || || Sbjct 24353 CGCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGT 24308 >seq29 Length=419596 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| |||| ||||| | || Sbjct 160752 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 160811 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| |||||||| || | ||||| Sbjct 160812 GACACCATCGACAACG-TCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCCGACCA 160870 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| ||||| ||||| || || | ||||| || |||||||| Sbjct 160871 GCAGCGCTTGATTTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGACTACAA 160930 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 160931 CATCCAGAAGGAGTCGACCCTCCACCTCGT 160960 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| || ||||| | || ||||| | | Sbjct 160980 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGTTGGAGGTCGAGTCTTCG 161039 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| ||||| ||||| | |||||| Sbjct 161040 GACACGATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 161099 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||||| || |||| || || ||| ||||||||| Sbjct 161100 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCGGACTACAAC 161159 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| || || || || Sbjct 161160 ATCCAGAAGGAGAGCACCCTTCACCTCGT 161188 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 ||||||| | |||||||| || ||||||| ||| || || ||||| || |||| ||||| Sbjct 160574 GCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGGCGCA 160633 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||| ||||||||||| ||||||||| |||| |||| || Sbjct 160634 CCCTCTCTGACTACAACATTCAGAAGGAGTCCACCTTGCACCT 160676 >seq9 Length=891578 Score = 114 bits (126), Expect = 1e-20 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 |||||||| | |||||||| || || |||| ||||||||| ||||| || || | |||| Sbjct 319802 GCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCA 319861 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||| |||||||||||||||||||||| |||| || || || ||| | ||| Sbjct 319862 CCCTCAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGC 319914 >seq13 Length=709687 Score = 109 bits (120), Expect = 6e-19 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 40783 GACAAAGAGG--GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGG 40840 |||| || || |||||||| | |||||||| || || |||| ||| ||||| ||||| | Sbjct 148108 GACAGAGTGGCAGCATCCCCCCCGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCG 148049 Query 40841 ACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | |||| || ||||||| |||||||||||||||||||||| |||| || || || ||| Sbjct 148048 AGGACGGCCGTACCCTCAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTG 147990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217229286560