Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 3e-13 seq8 84.2 5e-11 >seq14 Length=657811 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 239805 GAGATAAAGAAAGCGTACCGGCGTCTCGCCCTGCAGCACCACCCGGACAAGAACGGCGAC 239864 ||||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||| Sbjct 227535 GAGATCAAGAAGGCGTACCGGCGCGAGAGCCTGAAGCACCACCCGGACAAGGGCGGCGAC 227476 Query 239865 CCGGAGAAGTTCAAGCAGTTGACCGATGTGTACGACGTGCTCAAAGATCCCGCTAAGCGG 239924 |||||||||||||| || |||| | | || |||||| || || || ||||| Sbjct 227475 GAGGAGAAGTTCAAGCTCGTGTCCGAGGCGCACTCGGTGCTCTCCGACCCGGCGAAGCGT 227416 Query 239925 CGGGTGTACGACC 239937 | | |||||||| Sbjct 227415 CAGCGGTACGACC 227403 >seq8 Length=958091 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 157247 CCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAA 157306 |||| | || |||||||| ||| | ||||| || ||||| ||||| || ||| || Sbjct 466892 CCGGCCATGGCGTACTCGGACACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGTGAGCGAG 466951 Query 157307 ATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGG 157366 ||||||||||| | || || ||||| || | ||| ||| |||| ||| ||| | Sbjct 466952 ATCATGTCCATGAAGTCAAACGGGTTCGCCGCGCGGTAGTGCTTCTCGTTCCCGAGCGCG 467011 Query 157367 TTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCG 157426 ||| | |||||| || |||| |||||||| ||| | | || | || ||| Sbjct 467012 ACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCACATCAGCCGCGCGTTCATGCCG 467071 Query 157427 ATGAGCGCGACGGGAAGCGCC 157447 ||||||| ||| || |||||| Sbjct 467072 ATGAGCGAGACCGGGAGCGCC 467092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762190164608