Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4 134 1e-26 seq29 113 4e-20 >seq4 Length=1487122 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| |||||| ||||||||||||||||||||| ||| || |||| ||| Sbjct 23571 ACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGTCCGTCCTCC 23630 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| ||||| ||||| ||||| ||||| | |||||||||||| Sbjct 23631 AACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGG 23690 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||| ||||||| ||| || |||||| Sbjct 23691 ATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTCTTG 23750 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| || ||||||||||| Sbjct 23751 CCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| ||||||||||| || |||| | || || || || Sbjct 24086 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAACGTGCGACCATCCTCGAGCTGC 24145 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| || | ||||| |||||||| || | |||||||||||| || || Sbjct 24146 TTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 24205 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 |||||| | | | ||||| ||| ||||| | ||| |||||||||||||| Sbjct 24206 GCCTTAACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGTG 24265 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||| |||||| Sbjct 24266 AGGGTCTTGACGAAGATCTGCATG 24289 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || || ||||||||| ||||||||||| || |||| | || | Sbjct 23850 TACCAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCT 23909 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| || || |||||||| || | ||||| ||||| || || | |||||||| ||| Sbjct 23910 CCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCT 23969 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || ||| || | | | |||| | ||| ||||||| || ||||||| Sbjct 23970 GAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCT 24029 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||| |||||||| ||||| ||||| Sbjct 24030 TGCCGGTCAACGTCTTCACGAAGATCTGCAT 24060 >seq29 Length=419596 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| ||||||||||| || || |||| || || || Sbjct 161183 GTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCGAGCTG 161124 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| |||||||| || | ||||||||||||| || || Sbjct 161123 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTT 161064 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| | ||| ||||||| || ||||||||||| || Sbjct 161063 CGCCTTCACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTGCCGGT 161004 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||| |||||| Sbjct 161003 GAGCGTCTTGACGAAGATCTGCATG 160979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || || || || || || ||||| Sbjct 160943 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAA 160884 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| |||||||| || | ||||||||||| ||| || ||| || Sbjct 160883 AATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 160824 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||| ||||| | ||| || |||||||| |||| ||||| || Sbjct 160823 GTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 160764 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 160763 AAAGATCTGCAT 160752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073726616426