Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8 217 1e-51 seq2 134 1e-26 seq4 122 8e-23 seq29 96.9 3e-15 >seq8 Length=958091 Score = 217 bits (240), Expect = 1e-51 Identities = 553/834 (66%), Gaps = 17/834 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| | || |||| || |||||||| ||||| || | |||| Sbjct 467745 ATATGGCAGATGTACAAGACTGCCCAAGCGTCCTTTTGGACAGTCGAGGAGATTAACCTC 467686 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | || || | || ||| || | || || || ||| | | || || Sbjct 467685 TCGTATGACCTTATGGACTGGAATGGCAAGCTAAACGACAACGAGCGGCACTTCATCTCC 467626 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || ||||||||||| || ||||| || || ||||| || | || ||| | Sbjct 467625 TACGTGCTCGCCTTTTTCGCCGCCTCGGATGGCATCGTGAACGAAAACCTCGTGGAACGC 467566 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || ||||| | |||||||| | |||||||| || || ||| | || Sbjct 467565 TTCTCCAACGAGGTGCAGGCCGCGGAGGCGCGCTGCTTTTATGGCTTCCAAATCATGATC 467506 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || |||||||| | || | ||| ||||| |||||||| || ||| | ||| || | Sbjct 467505 GAGAACGTGCACGCCGAGACGTACTCGCTCCTCATCGACACCTACATCCGCGACCCCGCC 467446 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926 ||| || ||| |||| ||||| || || ||| ||| |||||||| || Sbjct 467445 GAGCGCGCCTTCCTCTTCGACGCCATCGACACCATACCCTGCATCAAGAAGAAGGCCGAC 467386 Query 57927 TGGTCAATCAAATGGATAAAAAGCG--CCACGG--CCACGTTCGCCGAGAGGCTAATCGC 57982 ||| | || ||||| ||| | | | | | || || ||| |||| |||| Sbjct 467385 TGGGCCCTCCGGTGGATC----GCGGACGAGCGTTCTGCTTTTGCGGAGCGGCTCGTCGC 467330 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 ||||||||||||||| || | ||||| || ||| || || || || || ||| | || Sbjct 467329 GTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGGCTCAA 467270 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| ||||| || ||||||||||| ||||| ||||||| | || || ||||||||||| Sbjct 467269 GAAGCGCGGGCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 467210 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG-ACGCGGG 58161 | ||||| || || |||||||| | | | ||| | | ||| || | | Sbjct 467209 CATGCATACCGACTTCGCGTGCCTCCTCTTCCACCACCTCCGCCGGCGGCCGCACCCCCG 467150 Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221 ||| | | ||| || ||||||| |||| |||||| || ||||| |||| || | Sbjct 467149 -CCGCGTGCTCCGCATCGTCGCCGAGGCCGTCGAGATCGAGAAGGAGTTCCTCACGGAGG 467091 Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281 | || ||||| | | |||| |||||| |||||| ||||||| ||||| | Sbjct 467090 CGCTCCCGGTCTCGCTCATCGGCATGAACGCGCGGCTGATGTGCCAGTACATCGAGTTCG 467031 Query 58282 TTGCCGACAGACTTTTGCTCGAACTGATTGGA--GAGCGTCATTACAACACGAAAAATCC 58339 | || ||| | || | ||| || ||| ||| || ||| | || || || Sbjct 467030 TCGCGGACCGCCTGCTCGTCGCGCT--CGGGAACGAGAAGCACTACCGCGCGGCGAACCC 466973 Query 58340 GTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 |||||| || ||| | ||||||||||| |||||||| ||||| ||||| || Sbjct 466972 GTTTGACTTCATGGACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAA 466919 Score = 188 bits (208), Expect = 6e-43 Identities = 381/561 (68%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | || || | ||| || Sbjct 469117 ATCTGGCAGATGTACAAGAAGGCTGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACTTG 469176 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||||||| ||| ||| | | |||| || |||| || | || ||| Sbjct 469177 TCCAAGGATCTGCACGACTGGAACAACAAGCTCACCGACGATGAGCGATACTTCATTTCG 469236 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| || || || || || |||||||| | ||||| || Sbjct 469237 CACGTCCTCGCATTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTCGTCGAGAGG 469296 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| | || || || | |||| ||| | ||||| ||||| || || | || Sbjct 469297 TTTTCCAACGAGGTTCAGGCAGCGGAAGCGCGCTGCTTCTACGGCTTCCAGATTATGATG 469356 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || ||||| ||||| ||||| ||| | |||||| || Sbjct 469357 GAGAACATCCACTCGGAGACCTACTCGCTCCTCATTGATACCTACATCAAGGACCCCGCT 469416 Query 57867 GAGAAACGTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || || || | ||| |||| ||||| || || || ||| |||||||| || Sbjct 469417 CAGCG-CGAGCACCTCTTCGACGCCATCGACACCATTCCTTGCATCAAGAAGAAGGCCGA 469475 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGC 57982 ||| | | ||||| || || || | ||||||||||| | || ||||| Sbjct 469476 CTGGGCTCTTCGCTGGATTTC---CGACAAGGAGTCTGCGTTCGCCGAGCGTCTCATCGC 469532 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 |||||||| || || ||||| ||||| || || ||| || | || || ||| | || Sbjct 469533 CTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGATCCTTCGCCTCCATCTTCTGGCTCAA 469592 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| || ||| ||||||| ||||| ||||| ||||||| | || || ||||| ||||| Sbjct 469593 GAAGCGTGGCTTGATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGATGAGGG 469652 Query 58103 TCTCCATACTGATTTTGCGTG 58123 | || || || || ||||| Sbjct 469653 CATGCACACCGACTTCGCGTG 469673 >seq2 Length=1603695 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || |||| ||| || |||||||| || || || ||||| |||||||| |||||| Sbjct 1472043 AAGAGGTCGGGTACCCAGAGGGCGTAGAAAAGATCACGAGCGCGGACCTCCTCCTTGCCG 1471984 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | || | || || ||||| || || ||||| ||||| | ||| | | Sbjct 1471983 TGGTTCTTGCGGAGGTCGATGAATTCGAACACATCGGCGTGCCAGGGCTCCAAGTAGATG 1471924 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || ||||| || || | ||| || || |||||||||||||||||||| || || ||| Sbjct 1471923 GCGAACGCTCCAGGCCGCTTGTTACCACCCTGATCGACGTAACGGGCTGTCGCGTCGTAA 1471864 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || | ||||| || |||| |||||||| Sbjct 1471863 ACACGGAGCATGGGAACGATTCCGTTGGA 1471835 Score = 114 bits (126), Expect = 1e-20 Identities = 246/367 (67%), Gaps = 3/367 (1%) Strand=Plus/Minus Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 || ||||| | |||||||| |||| |||||| ||| || || || ||||||||||| Sbjct 1472988 GGCTCGAAGCACTCATTGTTGCCCAAGATCTGACTGGTGGAGGCAGTAGGCATCGGCGCG 1472929 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 | || |||||||| || | ||||||| | | || ||| | | | ||||||| Sbjct 1472928 ACGAGCAGCGAGTTCCTGAGACCGTGCTGCGCCACCTTCGCCTTCAAGCTGGCCCAGTCC 1472869 Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCC 22690 || || || | || ||||| | |||| | ||||| || | | ||| | || Sbjct 1472868 CAGAGGTCCGTAGGGGTCAC---GCCCCAGAGGTCGTACTGAAGCTTGCCCTCAGAGGCG 1472812 Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 || ||||| | |||||| ||||| | ||| ||| | || | || ||||| ||||| Sbjct 1472811 GGACTGCCCTTGTACGTCTCGTAGGTACCGTATTGCTGCGCCATCTCACAGCTGGCCTCG 1472752 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTT 22810 | ||| ||| || || ||||| ||||| | || ||| | | | || || Sbjct 1472751 ACCGCCGCGTGGTAGATGGTCTCAAAGATCTGCTGGTTGAGCTTGCGTGCCTCGGGAGAG 1472692 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 ||| | |||| ||| | | || |||||||||||||| ||| || || || | |||||| Sbjct 1472691 TCGAAGGGCAGACGAAGCGCCATGAACGCGTCCGCCAGACCTTGCACACCGACACCGATA 1472632 Query 22871 GGTCGGT 22877 || |||| Sbjct 1472631 GGGCGGT 1472625 Score = 86.0 bits (94), Expect = 6e-12 Identities = 222/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || |||| ||||||| || || || || || || ||| || ||||||||||| Sbjct 1471742 GCCCGAATATTGTGAATGTTGATGCCGATCCCACCAGCCGTCTTGCTGATCATCGCGCAG 1471683 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 | || || || |||||| |||||||| ||| || || | | |||||||| || Sbjct 1471682 TCCTTTAGCGTCGAGTAGATACCCTCGATAGAGTCATCCTTCATGGACACCAAGAAGCAT 1471623 Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 || | |||| ||||| || |||| |||||| || || || || || ||| Sbjct 1471622 GAGCTGAGCTGCGGGTTGGGGGTTCCGGCATTGAACAGGGTTGGCGACGCATGTGTGAAG 1471563 Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839 |||| | ||||| || | ||| || || || ||| || || || |||||||| || Sbjct 1471562 TATCGCTCGGACATGAGGTGGTAAGTCTCAATTGCGCGGTCGATATCTTCTCCGTGGATG 1471503 Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC-GCCGTTAATTTT 23898 || | || || ||||| || | | ||| || | || | || || |||||| || || Sbjct 1471502 CCAACAGCCACACGCATGATGAGATGTTGTGGCCGTTC-AGCGACACGGCCGTTGATCTT 1471444 Query 23899 GAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 | || |||||||| | || || || || || || Sbjct 1471443 TAGGAGGTATGAACGCTCCAAAGTCTTGAAGCCGAA 1471408 >seq4 Length=1487122 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| ||||||||| |||| ||||| |||| Sbjct 24289 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTC 24230 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || || ||||||||| ||| | ||||||||||| Sbjct 24229 GGACACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 24170 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| | || || | || || || || || Sbjct 24169 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAA 24110 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || || | || | ||||||| Sbjct 24109 CATCCAGAAGGAGTCCACCCTCCATCTCGTTCTGCGCCTCCGTGGCGGTA 24060 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || |||||| | || || || | ||| Sbjct 23779 ATGCAAATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTTCC 23720 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||| || | || || |||||| Sbjct 23719 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 23660 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| |||||||| ||| ||| || || || ||| Sbjct 23659 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACAAC 23600 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || ||||| |||| ||| | ||| | || |||| Sbjct 23599 ATTCAGAAGGAGTCCACGCTTCACTTGGTCCTTCGTCTGCGCGGTGGTA 23551 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| |||||||| | || || || | || Sbjct 24060 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTTCT 24001 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| || | ||||| |||||| Sbjct 24000 GACACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACCAG 23941 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| |||| || | || || || || ||| Sbjct 23940 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACGTTGTCGGACTACAAC 23881 Query 31373 ATTCAAAAAGAATCGACTCTTCATC-TGGTA 31402 || || || || || || ||||| | ||||| Sbjct 23880 ATCCAGAAGGAGTCTACCCTTCACCTTGGTA 23850 >seq29 Length=419596 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || |||||| |||| || || ||||| Sbjct 160752 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 160811 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||| ||| | |||||||||||| Sbjct 160812 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCCGACCAG 160871 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || || ||| | || || ||| Sbjct 160872 CAGCGCTTGATTTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGACTACAAC 160931 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || ||||| || || || || ||| Sbjct 160932 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTT 160964 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| |||||||| | || || || | || Sbjct 160979 CATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGTTGGAGGTCGAGTCTTC 161038 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || || ||||||||| || | ||||||||||| Sbjct 161039 GGACACGATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCA 161098 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || ||||| ||||| ||| | || ||| Sbjct 161099 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 161135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764694943520