Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8 102 1e-16 >seq8 Length=958091 Score = 102 bits (112), Expect = 1e-16 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| |||| |||||||| | || | ||||| || |||||||| Sbjct 467189 CACGCGAAGTCGGTATGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGG 467248 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || |||| ||||| || ||||| |||||| Sbjct 467249 CCGGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAG 467308 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGCT-GTCATGT 33758 | || || || || || || || | || | ||| || || | | |||| ||| Sbjct 467309 ACGCCCTCGACGGCGGCGAACGCGACGAGCCGCTCCGCAAAAGCAGAACGCTCGTCCGCG 467368 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||| | ||||| ||||||||||| || | || || || || || ||||| | Sbjct 467369 ATCCACCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCGTCG 467428 Query 33819 AAGAG 33823 ||||| Sbjct 467429 AAGAG 467433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815190947680