Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 8e-12 >seq8 Length=958091 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 |||||||| |||||||| |||||||| || || ||||| || ||||| || || | || Sbjct 467231 TCGTTGGAGAACGTGAGGCCGGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGGCG 467290 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || || || || ||||||| || || || || || || || | || | ||| || || Sbjct 467291 AACGAGCCGGAGAAGAAGACGCCCTCGACGGCGGCGAACGCGACGAGCCGCTCCGCAAAA 467350 Query 42227 CCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 | | || || | |||||| | ||||| ||||||||||| || | || || Sbjct 467351 GCAGAACGCTCGTCCGCGATCCACCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGT 467410 Query 42284 ATCGTTTCTATGGCATTAAAGAG 42306 || || || ||||| | ||||| Sbjct 467411 ATGGTGTCGATGGCGTCGAAGAG 467433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136632892560