Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8 221 2e-52 >seq8 Length=958091 Score = 221 bits (244), Expect = 2e-52 Identities = 559/841 (66%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| | || || || ||||||||||| ||||| ||| | | || Sbjct 467745 ATATGGCAGATGTACAAGACTGCCCAAGCGTCCTTTTGGACAGTCGAGGAGATTAACCTC 467686 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 || | ||||| || ||| | | | | | || ||| ||||| | || || || Sbjct 467685 TCGTATGACCTTATGGACTGGAATGGCAAGCTAAACGACAAC-GAGCGGCACTTCATCTC 467627 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 || | | ||||| || |||| ||| ||||| ||||| ||||| || || || ||| Sbjct 467626 CTACGTGCTCGCCTTTTTCGCCGCCTCGGATGGCATCGTGAACGAAAACCTCGTGGAACG 467567 Query 125198 ATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||||| | ||| || || || |||| | |||||||| || |||||||||||| Sbjct 467566 CTTCTCCAACGAGGTG--CAGGCCGCGGAGGCGCGCTGCTTTTATGGCTTCCAAATCATG 467509 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||||||||| | || | |||||| || || |||| ||||| ||||| || Sbjct 467508 ATCGAGAACGTGCACGCCGAGACGTACTCGCTCCTCATCGACACCTACATCCGCGACCC- 467450 Query 125316 CAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 | || | | | | |||| |||| |||||||| | || | || || ||||| Sbjct 467449 CGCCGAGCGCGCCTTCCTCTTCGACGCCATCGACACCATACCCTGCATCAAGAAGAAGGC 467390 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | |||||||||| ||||| ||| | | || || | || || || Sbjct 467389 CGACTGGGCCCTCCGGTGGATCGCGGACGAGCGTTCTGCTTTTGCGGAGCGGCTCGTCGC 467330 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||||||||| |||||| ||||||| || || || || |||||||| |||||||| Sbjct 467329 GTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGGCTCAA 467270 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| ||||||||||| || ||| | |||||| | || || || |||||||| Sbjct 467269 GAAGCGCGGGCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 467210 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 | | || ||||| || || || || | || | || || ||| || | | Sbjct 467209 CATGCATACCGACTTCGCGTGCCTCCTCTT---CCACCACCTCCG--CCGGCGGCCGCAC 467155 Query 125615 CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCT 125674 | || | || || ||| || |||| ||||| ||| || | ||||| || Sbjct 467154 CCCCGCCG----CGTGCTCCGCATCGTCGCCGAGGCCGTCGAGATCGAGAAGGAGTTCCT 467099 Query 125675 AACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACAT 125734 || || | || |||||| | || ||||||||| ||| |||||| ||||||| Sbjct 467098 CACGGAGGCGCTCCCGGTCTCGCTCATCGGCATGAACGCGCGGCTGATGTGCCAGTACAT 467039 Query 125735 AGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAA 125794 ||||| || || || || || || || | | | ||| ||| ||| Sbjct 467038 CGAGTTCGTCGCGGACCGCCTGCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCGGC 466979 Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 ||| || ||||| |||||| || || || || || ||||| ||||| |||||||| Sbjct 466978 GAACCCGTTTGACTTCATGGACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAA 466919 Query 125855 G 125855 | Sbjct 466918 G 466918 Score = 192 bits (212), Expect = 9e-44 Identities = 382/560 (68%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| |||| ||||| ||||||| || ||| | || || Sbjct 469117 ATCTGGCAGATGTACAAGAAGGCTGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACTTG 469176 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| ||| |||| ||| | | | || || ||||||| | || || ||| Sbjct 469177 TCCAAGGATCTGCACGACTGGAACAACAAGCTCACCGACGATGAGCGATACTTCATTTCG 469236 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | || ||||| |||| || || || ||||||||||| || || || || | | Sbjct 469237 CACGTCCTCGCATTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTCGTCGAGAGG 469296 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 || || | ||| | || | | || | | ||||| ||||| ||||| || ||| Sbjct 469297 TTT-TCCAACGAGGTT--CAGGCAGCGGAAGCGCGCTGCTTCTACGGCTTCCAGATTATG 469353 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | |||||||| | ||||| || ||||| | ||||| || || Sbjct 469354 ATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATTGATACCTACATCAAGGACCCC 469413 Query 125316 ---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 || || | ||| ||||| |||| |||||||| | || | || || ||| Sbjct 469414 GCTCAGCGCGAGCAC---CTCTTCGACGCCATCGACACCATTCCTTGCATCAAGAAGAAG 469470 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| |||| ||||| ||| | ||||| ||| |||||| | || | Sbjct 469471 GCCGACTGGGCTCTTCGCTGGATTTCCGACAAGGAGTCTGCGTTCGCCGAGCGTCTCATC 469530 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || |||||||| || ||||| |||||||| || || || || ||||||| |||||| Sbjct 469531 GCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGATCCTTCGCCTCCATCTTCTGGCTC 469590 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || | ||||| || || ||| | |||||| | || || || || ||| Sbjct 469591 AAGAAGCGTGGCTTGATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGATGAG 469650 Query 125553 GGCCTACACTGTGACTTTGC 125572 ||| | ||| ||||| || Sbjct 469651 GGCATGCACACCGACTTCGC 469670 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 || |||||||||| ||||| |||||| | ||||| ||||| || || ||||| || || Sbjct 469841 ATCGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTTGCGGATCGCCTCCTC 469900 Query 125760 TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 || | ||| ||| ||||||| || ||| ||||| ||||||||| || Sbjct 469901 GTCGCTCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGATTTCATGGACATG 469960 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || || |||| ||||||||||| ||||||||| Sbjct 469961 ATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAG 469996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056365448560