Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq59 87.8 9e-13 seq10 86.0 3e-12 seq1 86.0 3e-12 seq7 84.2 1e-11 seq32 82.4 4e-11 >seq59 Length=184886 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| || ||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 96764 TGGCCAATGCCGGGGTCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 96705 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 96704 TGAGCTAATCGGCCG 96690 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 94613 AACTTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAAC 94554 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||| | ||||| Sbjct 94553 CAACTGAGCTAGTCGGCCG 94535 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 101162 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 101221 Query 11528 CCGT 11531 |||| Sbjct 101222 CCGT 101225 >seq10 Length=765540 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 340209 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 340268 Query 11528 CCGT 11531 |||| Sbjct 340269 CCGT 340272 >seq1 Length=1776945 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 740736 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 740795 Query 11528 CCGT 11531 |||| Sbjct 740796 CCGT 740799 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 727221 TTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 727162 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| | |||| Sbjct 727161 CTGAGCTAGTCGGCC 727147 >seq7 Length=1017230 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||| | | |||||||||| ||||||| ||||||||||||| |||| Sbjct 84460 AAAAACAA--TGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGC 84403 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| | |||| Sbjct 84402 TCTAACCAACTGAGCTAGTCGGCC 84379 >seq32 Length=364690 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 64981 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 64922 Query 11528 CC 11529 || Sbjct 64921 CC 64920 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490224801256