Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq29 86.0 6e-12 >seq4 Length=1487122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 94799 ACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||||| ||||| || | ||| || || || ||| |||||| Sbjct 23851 ACCAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTC 23910 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| ||||| || || || || || || | Sbjct 23911 CAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTG 23970 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||||||| | ||| ||||||| ||||| || | |||||| || || Sbjct 23971 AATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTT 24030 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || ||||| ||||||||||| Sbjct 24031 GCCGGTCAACGTCTTCACGAAGATCTGCAT 24060 >seq29 Length=419596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || || | |||| | |||||| ||||| || || Sbjct 160948 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCT 160889 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || || || | ||||| || || ||||| || || ||||| | ||| || |||||| Sbjct 160888 GCGAAAATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTG 160829 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | ||||| || | |||||||| || || || | || Sbjct 160828 ACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 160769 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 160768 TTGACAAAGATCTGCAT 160752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289485286160