Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13 116 6e-22 seq9 109 9e-20 >seq13 Length=709687 Score = 116 bits (128), Expect = 6e-22 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| |||||||||||||| ||||||||| ||||||| | |||| || Sbjct 384822 GCTATCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTCATCTACGAG 384881 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| |||| ||| | |||||||||||| ||| ||| |||| ||| || || ||| Sbjct 384882 GAGACCCGTGGTGTCCTCAAGATCTTCCTCGAGAACGTCATCCGTGACTCTGTCACCTAC 384941 Query 16607 ACCGAGCACGCTAA 16620 || |||||||| || Sbjct 384942 ACTGAGCACGCCAA 384955 >seq9 Length=891578 Score = 109 bits (120), Expect = 9e-20 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| |||||||||||||| || ||||||||||| ||||||||| |||| Sbjct 184936 AGGTATCACGAAGCCCGCTATCCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 184877 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||| || |||| |||| ||| | |||||||||||| ||| ||| | ||| Sbjct 184876 CGGTCTCATCTACGAGGAGACCCGTGGTGTGCTCAAGATCTTCCTCGAGAACGTAAGCCA 184817 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||||||||||| || ||||||||||| ||||||||| |||| Sbjct 489212 AGGCATCACTAAGCCCGCCATCCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 489153 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | |||| || |||| |||| |||| | |||||||||||| | | ||| Sbjct 489152 CGGTCTCATCTACGAGGAGACCCGTGGTGTTCTCAAGATCTTCCTCGAAAACGT 489099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074920222058