Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8 154 1e-32 seq21 104 2e-17 >seq8 Length=958091 Score = 154 bits (170), Expect = 1e-32 Identities = 230/326 (71%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 6216 ATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC 6275 |||||| | ||| ||||| ||||||| ||||| |||||||| || ||||||||| Sbjct 860796 ATGCCGGTCCTCTTGACCAAGATCGAGGGCAAGGGCAACGGTATCAAGACCGTCATTCCG 860737 Query 6276 AACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTC 6335 |||||| | || || || |||||| | ||||| |||| ||||| || || | ||| Sbjct 860736 AACATGTCCGACGTGGCCCGCGCGCTCAGCCGCCCGCCCACGTACCCCACTAAGTTCTTC 860677 Query 6336 GGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAAC 6395 ||||| || || ||||| ||||| | || | || ||||| |||| |||||||||| Sbjct 860676 GGGTGTGAGCTCGGCGCGCAGACCGTTCTCGACGAGAAGAACGATCGCTACATCGTTAAC 860617 Query 6396 GGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTG 6455 || |||| || || ||||||| | || | || |||||||| || ||||| ||| Sbjct 860616 GGTGCGCACGACGCTACCAAGCTCCGCGAGCTGCTCGACGGCTTCATCGAGAAGTTCGTG 860557 Query 6456 CTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACC 6515 ||||| || ||| | || |||||||| || | || | |||||||| || | Sbjct 860556 CTGTGCAAGGCGTGCAAGAATCCGGAGACGGACTTGATCAT---CACCAAGAGCGACGAC 860500 Query 6516 ATCTCTCAGGGCTGCAAAGCGTGCGG 6541 ||| | | |||||| |||||||| Sbjct 860499 ATCATCCGCGACTGCAAGGCGTGCGG 860474 >seq21 Length=580701 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 365705 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 365646 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 365645 GCCAATATTTAGCTTTA 365629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945950856286